View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6144_high_7 (Length: 240)
Name: NF6144_high_7
Description: NF6144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6144_high_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 27211458 - 27211235
Alignment:
| Q |
17 |
cagtctggccacttggtccgatcgccacaagcttaggaatgccagctaccttgaatttgcgacttagaaattcttttctcgagtcaccaaagggaagtgc |
116 |
Q |
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| T |
27211458 |
cagtctggccacttggtccgatcgccaccagcttaggaatgccagctaccttgaatttgcgacttagaaattcttttctcgagtcaccaaagggaagtgc |
27211359 |
T |
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| Q |
117 |
cagccatggcatttccgcaaagaattcatcaaaggagtcttgatccctatcactagagatgaaaaccacttcaagtgcatcattgttttgtgccttaatc |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||| |
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| T |
27211358 |
cacccatggcatttccgcaaagaattcatcaaaggagtcttgatccctatcactagagatgaaaaccacttcaagtgcatcattgtcttctgtcttgatc |
27211259 |
T |
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| Q |
217 |
ttatggtatgcctcaatgagtttt |
240 |
Q |
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||| ||||||| |||||||||||| |
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| T |
27211258 |
ttaaggtatgcatcaatgagtttt |
27211235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 27196211 - 27195988
Alignment:
| Q |
17 |
cagtctggccacttggtccgatcgccacaagcttaggaatgccagctaccttgaatttgcgacttagaaattcttttctcgagtcaccaaagggaagtgc |
116 |
Q |
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||||||||||||||||||| |||||||| ||||| || ||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
27196211 |
cagtctggccacttggtccaatcgccacgagcttggggatgccagataccttgaatttgcgactcaagaattcttttctcgtgtcaccaaagggaagtgc |
27196112 |
T |
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| Q |
117 |
cagccatggcatttccgcaaagaattcatcaaaggagtcttgatccctatcactagagatgaaaaccacttcaagtgcatcattgttttgtgccttaatc |
216 |
Q |
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||||||||||||| ||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27196111 |
cagccatggcattcccgcaaagaattcattaaacgattcttgatccctgtcacttgagatgaaaaccacttcaagtgcatcattgttttgtgccttaatc |
27196012 |
T |
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| Q |
217 |
ttatggtatgcctcaatgagtttt |
240 |
Q |
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| T |
27196011 |
ttatggtatgcctcaatgagtttt |
27195988 |
T |
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