View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6144_low_11 (Length: 237)
Name: NF6144_low_11
Description: NF6144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6144_low_11 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 20768311 - 20768474
Alignment:
| Q |
74 |
gtatttattaaatcaacattagtaattattttacaattatatttgatgagatttgaaatctagccttttgaaattacaatgttaaacttttaatactcaa |
173 |
Q |
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| T |
20768311 |
gtatttattaaatcaacattagtaattattttacaattatatttcatgagatttgaaatctagccttttgaaattacaatgttaaacttttaatactcaa |
20768410 |
T |
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| Q |
174 |
ctctcaccacttattcctaaaaaataaaactgtcaccacttataacaataaacttaaaacacac |
237 |
Q |
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| T |
20768411 |
ctctcaccacttattcctaaaaaataaaactctcaccacttataacaataaacttaaaacacac |
20768474 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 20761517 - 20761565
Alignment:
| Q |
3 |
actcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
51 |
Q |
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| T |
20761517 |
actcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
20761565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 20767908 - 20767956
Alignment:
| Q |
3 |
actcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
51 |
Q |
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| T |
20767908 |
actcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
20767956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 20768252 - 20768290
Alignment:
| Q |
50 |
tatttaataaataaagggacactagtatttattaaatca |
88 |
Q |
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| T |
20768252 |
tatttaataaataaagggacactagtatttattaaatca |
20768290 |
T |
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