View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6144_low_9 (Length: 242)

Name: NF6144_low_9
Description: NF6144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6144_low_9
NF6144_low_9
[»] scaffold0642 (1 HSPs)
scaffold0642 (181-227)||(8588-8634)
[»] scaffold0345 (1 HSPs)
scaffold0345 (181-227)||(18501-18547)
[»] scaffold0105 (1 HSPs)
scaffold0105 (181-227)||(20435-20481)
[»] chr4 (1 HSPs)
chr4 (181-227)||(8193779-8193825)
[»] chr6 (2 HSPs)
chr6 (183-227)||(19408368-19408412)
chr6 (93-161)||(10459673-10459741)
[»] chr2 (1 HSPs)
chr2 (181-221)||(10928437-10928477)
[»] chr5 (1 HSPs)
chr5 (93-131)||(20539533-20539571)


Alignment Details
Target: scaffold0642 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 8634 - 8588
Alignment:
Q  181 taatcaattcaatgttattgtctctccattattgaaacgtttgtttt 227  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  8634 taatcaattcaatgttattgtctctctattattgaaatgtttgtttt 8588  T

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Target: scaffold0345 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 18547 - 18501
Alignment:
Q  181 taatcaattcaatgttattgtctctccattattgaaacgtttgtttt 227  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  18547 taatcaattcaatgttattgtctctctattattgaaatgtttgtttt 18501  T

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Target: scaffold0105 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 20435 - 20481
Alignment:
Q  181 taatcaattcaatgttattgtctctccattattgaaacgtttgtttt 227  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  20435 taatcaattcaatgttattgtctctctattattgaaatgtttgtttt 20481  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 8193779 - 8193825
Alignment:
Q  181 taatcaattcaatgttattgtctctccattattgaaacgtttgtttt 227  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  8193779 taatcaattcaatgttattgtctctctattattgaaatgtttgtttt 8193825  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 19408368 - 19408412
Alignment:
Q  183 atcaattcaatgttattgtctctccattattgaaacgtttgtttt 227  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  19408368 atcaattcaattttattgtctctcctttattgaaacgtttgtttt 19408412  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 10459673 - 10459741
Alignment:
Q  93 ctcactattaatatttattgttaaatatgaaaaattctactgttaatcagtgcatcagatggcacacaa 161  Q
    |||||||||||||||||||||||||| | ||| ||| || |||||| |  |||||||| | ||||||||    
T  10459673 ctcactattaatatttattgttaaatttaaaatattttattgttaacctatgcatcagtttgcacacaa 10459741  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 10928477 - 10928437
Alignment:
Q  181 taatcaattcaatgttattgtctctccattattgaaacgtt 221  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  10928477 taataaattcaatgttattgtctctccattattgaaacgtt 10928437  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 20539533 - 20539571
Alignment:
Q  93 ctcactattaatatttattgttaaatatgaaaaattcta 131  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  20539533 ctcactattaatatttattgttaaatttgaaatattcta 20539571  T

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