View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6145_high_2 (Length: 596)
Name: NF6145_high_2
Description: NF6145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6145_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 184 - 580
Target Start/End: Complemental strand, 23827294 - 23826898
Alignment:
| Q |
184 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatatgggtgaatata |
283 |
Q |
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| T |
23827294 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggtggtttatatgtagggaactaatatgggtgaatata |
23827195 |
T |
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| Q |
284 |
ctgtggtggcccacaaaagcaagatcgatgaagcactaacatagacacgaaattgcactaatgcgtgtatacacaacaatttaataaaatgcaagtgatt |
383 |
Q |
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| T |
23827194 |
ctgtggtggcccacaaaagcaagatcgatgaagcactaacacagacacgaaatagcactaatgcgtgtatacacaacaatttaataaaatgcaagtgatt |
23827095 |
T |
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| Q |
384 |
gaatcgaatgtaattacgtatgtcagtgcagtattggtttagacattaacacgttcaaacacttgacatgccattattgcgaaaagtgtcgctatatata |
483 |
Q |
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| T |
23827094 |
gaatcgaatgtaattacgtatgtcagtgtagtattggtttagacattaacacgttcaaacacttgacatgccattattgcgaaaagtgtcgctatatata |
23826995 |
T |
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| Q |
484 |
gcaagatagagtgtcataagaaaagtataacagtactaaaaaagttgagcaacttgactaaaagcttaagctataaaagtttggatggattagtaaa |
580 |
Q |
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| T |
23826994 |
gcaagatagagtgtcataagaaaagtataacagtacgaaaaaagttgagcaactagactaaaagcttaagctataaaagtttggatggattagtaaa |
23826898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 23827467 - 23827370
Alignment:
| Q |
12 |
aatactaattcccataactttgttgcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgattgtgaattgaaactc |
109 |
Q |
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| T |
23827467 |
aatactaattcccataactttgttgcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgattgtgaattgaaactc |
23827370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 23823605 - 23823522
Alignment:
| Q |
12 |
aatactaattcccataactttgttgcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgatt |
95 |
Q |
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| T |
23823605 |
aatactaattcccatagctttgttgcctatagatcacaacaacaaagtagagaaggtcatatccaacagaaatgaaccatgatt |
23823522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 23831338 - 23831229
Alignment:
| Q |
187 |
gtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatatgggtgaatatactg |
286 |
Q |
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||||||||||||||||||| ||||| | |||| ||| || ||||||||||| |||| ||| |||| |||||||| |||||||||||| ||| | | ||| |
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| T |
23831338 |
gtaatgaagttcaaggaagaatataaagaagaaaaacaggaaggaggagaggtgaagaagagtgttgatatgtagagaactaatatggatgagtcttctg |
23831239 |
T |
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| Q |
287 |
tggtggccca |
296 |
Q |
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|||||||||| |
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| T |
23831238 |
tggtggccca |
23831229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 582
Target Start/End: Complemental strand, 23817871 - 23817811
Alignment:
| Q |
522 |
aaaaagttgagcaacttgactaaaagcttaagctataaaagtttggatggattagtaaatg |
582 |
Q |
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|||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
23817871 |
aaaaggttgagctacttgactaaaaagttaagctaaaaaagtttggatggattagtaaatg |
23817811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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