View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6145_high_4 (Length: 281)
Name: NF6145_high_4
Description: NF6145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6145_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 41924268 - 41924527
Alignment:
| Q |
14 |
caatatcaatttggttgagtggtcctatcctttattagctttttcaaatgaggtacccgagatctccaaaatagatgtcatctcatgggtagcatgagtc |
113 |
Q |
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| T |
41924268 |
caatatcaatttagttgagtggtcctatcctttattagctttttcaaatgaggtacccgagatctccaaaatagaggtcatctcatgggtagcatgagtc |
41924367 |
T |
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| Q |
114 |
caaaaaatctgcttaatgtttccatagccaaaatcccacaatctcccaaaataaaatcgtacaaaacagggaaaagctgcacatgatgggtgcatgactt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41924368 |
caaaaaatctgcttaatgtttccatagccaaaatcccacaatctcccaaaataaaatcgtacaaaacagggaaaagctgcacatgatggttgcatgactt |
41924467 |
T |
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| Q |
214 |
tgtatgacaccaatcacaat--acacagttcaatagttgactacctcaccatgacctatg |
271 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41924468 |
tgtatgacaccaatcacaatacacacagttcaatagttgactacctcaccatgacctatg |
41924527 |
T |
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