View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6145_high_5 (Length: 278)
Name: NF6145_high_5
Description: NF6145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6145_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 34330937 - 34331100
Alignment:
| Q |
9 |
tcaatgtagatgatcatttagactctcctcatgacccaacactgctaccagagttgttggttaataaagtaaaatactccttgtgttgtaagtcttgata |
108 |
Q |
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| T |
34330937 |
tcaatgtagatgatcatttagactctcctcatgacccaacactgctaccagagttgttagttaataaagtaaaatactccttgtgttgcaagtcttgata |
34331036 |
T |
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| Q |
109 |
ttgttgtgtaggaagtgtgagataaaagtctcacatttgagttaagatgtgatgttcaactcat |
172 |
Q |
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| T |
34331037 |
ttgttgtgtaggaagtgtgagataaaagtctcacatttgagttaagatgtgatgttcaactcat |
34331100 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 34331146 - 34331237
Alignment:
| Q |
168 |
ctcataatccggtaatgctaccataatcgatgtttactaaagtgatcgactatattgcgtgattactctttgcccaatatgaatgatctctc |
259 |
Q |
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| T |
34331146 |
ctcataatccggtaatgctaccatagtcgatggttactaaagtgatcgactatattgcgtgattactctttgcccaatatgaatgatctctc |
34331237 |
T |
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