View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6145_high_8 (Length: 243)
Name: NF6145_high_8
Description: NF6145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6145_high_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30757401 - 30757159
Alignment:
| Q |
1 |
tctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaac |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757401 |
tctttggttttacaagaagaaagtaataatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaac |
30757302 |
T |
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| Q |
101 |
cttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757301 |
cttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagca |
30757202 |
T |
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| Q |
201 |
tggctatcctaatgtgaacaagaagatttcacaggcctatgct |
243 |
Q |
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| T |
30757201 |
tggctatcctaatgtgaacaagaagatttcacaggccaatgct |
30757159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30764853 - 30764611
Alignment:
| Q |
1 |
tctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaac |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30764853 |
tctttggttttacaagaagaaagtaataatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaac |
30764754 |
T |
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| Q |
101 |
cttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagca |
200 |
Q |
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| T |
30764753 |
cttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagca |
30764654 |
T |
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| Q |
201 |
tggctatcctaatgtgaacaagaagatttcacaggcctatgct |
243 |
Q |
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| T |
30764653 |
tggctatcctaatgtgaacaagaagatttcacaggccaatgct |
30764611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 25227221 - 25227444
Alignment:
| Q |
3 |
tttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaacct |
102 |
Q |
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||||||||| ||||||||||||| ||| ||||| | | |||| | ||||| |||| || |||||||| |||||||||||||||||||| |||||||| |
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| T |
25227221 |
tttggttttgcaagaagaaagtagcaatgcttctttaccttcaattccttcccttgtcgaggataatgtacttgttaatgcatatgatgcgaagaaacca |
25227320 |
T |
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| Q |
103 |
taagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatg |
202 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||| ||||| |||| ||| |||| ||| |
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| T |
25227321 |
caagggcatggtaaaggttcattcactaaaccttcatcaaggttttgtaccttttgcaataggcacaatcacaccattgatttttgttataaaaaacatt |
25227420 |
T |
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| Q |
203 |
gctatcctaatgtgaacaagaaga |
226 |
Q |
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| T |
25227421 |
gatatcttaatgtgaataagaaga |
25227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 20700552 - 20700433
Alignment:
| Q |
103 |
taagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatg |
202 |
Q |
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|||||||||| |||| | |||| || ||||||||| ||||||| ||||| ||||| || | | ||||||||| ||| ||||| ||||||||||||| |
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| T |
20700552 |
taagggcgtgataaaggatcatacattaaaccttcttcaaggtattgcaccttttgcaacaaatacaatcacaatgttgtttttttttatcaaaagcatg |
20700453 |
T |
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| Q |
203 |
gctatcctaatgtgaacaag |
222 |
Q |
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| T |
20700452 |
actttcctaatgtgaacaag |
20700433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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