View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6145_low_1 (Length: 844)
Name: NF6145_low_1
Description: NF6145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6145_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 2559685 - 2559130
Alignment:
| Q |
18 |
atgttcctgtcattctctacaacccaaatgtaggccacaatcgtgccaaatgtttcaaaacactggaatcatttgctttcgcaaccatacgatcaacatg |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559685 |
atgttcgtgtcattctctacaacccaaatgtaggccacaatcgtgccaaatgtttcaaaacactggaatcatttgctttcgcaaccatacgatcaacatg |
2559586 |
T |
|
| Q |
118 |
aaactcatctcgcgcaaactttcccctcaacacttcatatcataa---attaccacctctgcaaatagcccaaccgagtttcattagacaagcttcattc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559585 |
aaactcatctcgcgcaaactttcccctcaacacttcatatcataacttattaccacctctgcaaatagcccaaccgagtttcattagacaagcttcattc |
2559486 |
T |
|
| Q |
215 |
attttttaccaaccttcgtaaccccaaacttctaaaattaaatattccggcattgttactgttctccaaattcaccgtactatgctttctggaattctca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
2559485 |
attttttaccaaccttcgtaaccccaaacttctaaaattaaatatttcggcattgttactgttctccaaattcactgcactatgctttctggaattctca |
2559386 |
T |
|
| Q |
315 |
ccgccacacctcctttcttttttgcttgattatatttatctgtatcattgaaatcacaaaccaactactaaccaagcaccactagctaataccatttcct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559385 |
ccgccacacctcctttcttttttgcttgattatatttatctgtatcattgaaatcacaaaccaactactaaccaagcaccactagctaataccatttcct |
2559286 |
T |
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| Q |
415 |
atgaaccttagatcctcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcggtccttcgtataatagtaagtatgccggt |
514 |
Q |
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| T |
2559285 |
atcaaccttagatcctcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcagtccttcgtataatagtaagtatgccggt |
2559186 |
T |
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| Q |
515 |
tttatagaaaataaaacatcaaatctaacgagacacgtgcaataccataacctgtc |
570 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2559185 |
tttatcaaaaataaaacatcaaatctaacgagacacatgcaataccataacctgtc |
2559130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 566 - 836
Target Start/End: Complemental strand, 2559077 - 2558807
Alignment:
| Q |
566 |
ctgtcgtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat |
665 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559077 |
ctgtagtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat |
2558978 |
T |
|
| Q |
666 |
ttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacgacatgaaattcattttacctgtcgacttccgttgctga |
765 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
2558977 |
tccttctatttcaattattacttcacttatccctcatcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttga |
2558878 |
T |
|
| Q |
766 |
gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgct |
836 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2558877 |
gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgct |
2558807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 517
Target Start/End: Complemental strand, 2551639 - 2551548
Alignment:
| Q |
426 |
atcctcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcggtccttcgtataatagtaagtatgccggtttt |
517 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| ||| |||| |||||| ||||||| ||||| |||||||||||| ||||| |
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| T |
2551639 |
atcctcctacatacttcattggaagtcttcacttggactagtgataagaagaatttttaggtcctttatataacagtaagtatgccagtttt |
2551548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 614 - 706
Target Start/End: Complemental strand, 25642353 - 25642261
Alignment:
| Q |
614 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcata |
706 |
Q |
| |
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||||||| |||| ||||||||||||||| | |||||||||||||||||| | ||| |||||||||||||||| || ||||||||| |||| |
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| T |
25642353 |
attaagccttgtgaactatttgtctaatatcattccttaatcgattatatcctccttttatttcaattattactcaacatatccctcaacata |
25642261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 683
Target Start/End: Complemental strand, 18997740 - 18997671
Alignment:
| Q |
614 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
683 |
Q |
| |
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||||||||| | ||||||||||||||| ||||||| ||||||||||||| | ||| |||||||||||| |
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| T |
18997740 |
attaagcttcatgaactatttgtctaatatccttcctgaatcgattatatactccttttatttcaattat |
18997671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 719
Target Start/End: Complemental strand, 10169270 - 10169172
Alignment:
| Q |
621 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtct |
719 |
Q |
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|||| |||||| | |||||||||||||||| ||| |||||||| | || |||||||||||||| ||||| | ||||| || ||||||| ||||||| |
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| T |
10169270 |
tttgataactaatcgtctaatgaccttcctagatcaattatatactcctcctatttcaattattccttcaactgtcccttattgtatgttttcatgtct |
10169172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 674
Target Start/End: Original strand, 29277840 - 29277893
Alignment:
| Q |
621 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctat |
674 |
Q |
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||||||||||| || ||||||| |||||||||||||| |||||| ||| ||||| |
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| T |
29277840 |
tttgttaactaattatctaatgcccttccttaatcgagtatatacttcatctat |
29277893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 683
Target Start/End: Complemental strand, 35246938 - 35246872
Alignment:
| Q |
617 |
aagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
683 |
Q |
| |
|
|||||| |||||||| || | |||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
35246938 |
aagcttcgttaactaattatttaatttccttccttaatcgattatatatttctcctatttcagttat |
35246872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 34049464 - 34049411
Alignment:
| Q |
675 |
ttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacga |
728 |
Q |
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| T |
34049464 |
ttcaaatataacctcacttatccctcatcgtatgtttccatgtctagtaaacga |
34049411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 834
Target Start/End: Original strand, 21602398 - 21602479
Alignment:
| Q |
752 |
acttccgttgctgagcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatg |
834 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||| ||||| |||| ||| || ||||| | |||||||| |||||||| |
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| T |
21602398 |
acttccgttgctgagcaaaatagattattgattccatggcatatgaccggataatt-aatatgattgcaaacctaaccctatg |
21602479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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