View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6145_low_4 (Length: 417)
Name: NF6145_low_4
Description: NF6145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6145_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 43584266 - 43583865
Alignment:
| Q |
1 |
gtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatccacttcacattgcacatgcatag |
100 |
Q |
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| T |
43584266 |
gtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatccacttcacattgcacatgcatag |
43584167 |
T |
|
| Q |
101 |
tgtttgcattatgaacacacaataagaggtctacttgtagccatacattattagtttgcatgtctactaccttatttagtctctaaagccactttgatta |
200 |
Q |
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| T |
43584166 |
tgtttgcattatgaacacacaataagaggtctgcttgtagccatacattattagtttgcatgtctactaccttatttagtctctaaagccactttgatta |
43584067 |
T |
|
| Q |
201 |
tacaaaaagattatagttcgaccttgctgccttctaacaannnnnnnnccactaacaaattaatcagtgacatttggt--nnnnnnngaagaaagatata |
298 |
Q |
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| T |
43584066 |
tacaaaaagattatagttcgaccttgctgccttctaacaaatttttttccactaacaaattaatcagtgacatttggtaaaaaaaagaaagaaagatata |
43583967 |
T |
|
| Q |
299 |
tatctcctattgtagaaaagagtagaaaacaaataaattttattaatgacacacaatagaccttcaatcacatagataaaagagtccaataattaaggct |
398 |
Q |
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| T |
43583966 |
tatctcctattgtagaaaagagaagcaaacaaataaattttattaatgacacacaatagaccttcaatcacatagataaaagagtccaataattaaggct |
43583867 |
T |
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| Q |
399 |
ac |
400 |
Q |
| |
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|| |
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| T |
43583866 |
ac |
43583865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 43584315 - 43584251
Alignment:
| Q |
13 |
aatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatc |
77 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |
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| T |
43584315 |
aatcctgaatgctccaaacacatacttcatcataaacaatgacaaacaagtttgtcaattcaatc |
43584251 |
T |
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