View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6146_low_1 (Length: 363)
Name: NF6146_low_1
Description: NF6146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6146_low_1 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0274 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 14075 - 14420
Alignment:
| Q |
18 |
ttcataacaacaaggaaacctccaagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatataccttaaccagggttgatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14075 |
ttcataacaacaaggaaacctccaagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatataccttaaccagggttgatg |
14174 |
T |
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| Q |
118 |
ccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggtagatgctagtatgctaccgcaattgtgatcgcggctg |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14175 |
ccactacaattgcggtctagttcctgcacagttgcagttgcagccatgatccttaattagggttgatgctagtatgctaccgcaattgtgatcgcggctg |
14274 |
T |
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| Q |
218 |
catacatcaaaaacctaatgttgcactaaaaatcacagccctgatcagtttttaaaaccattcatattcccatcatacaatagcctaaatttaaacccta |
317 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
14275 |
catatatcaaaaacctaatgttgcagtaaaaatcacagccctgatcagtttttaaaaccattcatattcctatcatacaacagcctaaatttaaacccta |
14374 |
T |
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| Q |
318 |
aaccataaacaacatatcgaaaaggttaactgccctatgcttctcc |
363 |
Q |
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| T |
14375 |
aaccataaacaacatatcgaaaaggttaactgcccgatacttctcc |
14420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 100 - 363
Target Start/End: Complemental strand, 41430726 - 41430463
Alignment:
| Q |
100 |
ccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggtagatgctagtatgctaccg |
199 |
Q |
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| T |
41430726 |
ccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggttgatgctagtatgctaccg |
41430627 |
T |
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| Q |
200 |
caattgtgatcgcggctgcatacatcaaaaacctaatgttgcactaaaaatcacagccctgatcagtttttaaaaccattcatattcccatcatacaata |
299 |
Q |
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| T |
41430626 |
caattgtgatcgcggctgcatacatcaaaaacctaatgttgcagtaaaaatcacagccctgataagtttttaaaatcattcatattcccatcatacaaca |
41430527 |
T |
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| Q |
300 |
gcctaaatttaaaccctaaaccataaacaacatatcgaaaaggttaactgccctatgcttctcc |
363 |
Q |
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| T |
41430526 |
gcctaaatttaaaccctaaaccataaacaacatatcgaaaaggttaactgcccgatacttctcc |
41430463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 41430848 - 41430724
Alignment:
| Q |
18 |
ttcataacaacaaggaaacctccaagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatataccttaaccagggttgatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |
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| T |
41430848 |
ttcataacaacaaggaaacctccaagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatatactttaattagggttaatg |
41430749 |
T |
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| Q |
118 |
ccactacaattgcggtctagttcct |
142 |
Q |
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| T |
41430748 |
ctactacaattgtagtctagttcct |
41430724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 41440231 - 41440188
Alignment:
| Q |
303 |
taaatttaaaccctaaaccataaacaacatatcgaaaaggttaa |
346 |
Q |
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| T |
41440231 |
taaatttaaaccctaaaccataaacaacatatccaaagggttaa |
41440188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 41440309 - 41440228
Alignment:
| Q |
194 |
ctaccgcaattgtgatcgcggctgcatacatcaaaaacct-aatgttgcactaaaaatcacagccct-gatcagtttttaaa |
273 |
Q |
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|||| ||||||| |||||||||||||| |||||||||||| ||||||||| | |||||||||||| ||||| |||||||| |
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| T |
41440309 |
ctactgcaattgcgatcgcggctgcatgcatcaaaaacctaaatgttgcagccacaatcacagccctagatcaatttttaaa |
41440228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 152 - 290
Target Start/End: Complemental strand, 33368505 - 33368368
Alignment:
| Q |
152 |
cagttgcagccatgatccttaattagggtagatgctagtatgctaccgcaattgtgatcgcggctgcatacatcaaaaacct-aatgttgcactaaaaat |
250 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
33368505 |
cagtcgcagccatgatccttaattagggttgatgctagtatgctaccgcaattgtgatcgcggctgcatacatcaaaaacctaaatgttgcagccataat |
33368406 |
T |
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| Q |
251 |
cacagccctgatcagtttttaaaaccattcatattcccat |
290 |
Q |
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| T |
33368405 |
cacagccc--atcagtttttaaaaccatccagattcccat |
33368368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 33369052 - 33368999
Alignment:
| Q |
47 |
aatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatatac |
100 |
Q |
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| T |
33369052 |
aatcccttctatttcgaaaaccaaaacaaacatcctcaaactgtaaaactatac |
33368999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 7764270 - 7764327
Alignment:
| Q |
46 |
caatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatatacctt |
103 |
Q |
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|||||| ||||| ||||||||||||||||||| |||| ||||| ||||| |||||||| |
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| T |
7764270 |
caatcctctctatttcgaaaaccaaaacaaacatccttaaactttaaaactatacctt |
7764327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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