View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_high_2 (Length: 465)
Name: NF6147_high_2
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 7101073 - 7100635
Alignment:
| Q |
13 |
aatattctgtctctacatata--caaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatggctgtttgacatgaattaattata |
110 |
Q |
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| T |
7101073 |
aatattctgtctctatatatatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatagctgtttgacatgaattaactata |
7100974 |
T |
|
| Q |
111 |
tcatcttatcttatgtatagtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatcagtttgacatc |
210 |
Q |
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| T |
7100973 |
tcatcttatcttatgtagagtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtgtatctgtttgacatc |
7100874 |
T |
|
| Q |
211 |
ggaatttcaatgttctgttcctcaaagt--gacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttg |
308 |
Q |
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|||||||||||||| |||||||||| || |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7100873 |
ggaatttcaatgttttgttcctcaacgtgagacaagtatgatgtctttgttagctttagaggtctagatatccttgaaggttttcttagccatttggttg |
7100774 |
T |
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| Q |
309 |
aagctctatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatcctt |
408 |
Q |
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| T |
7100773 |
aagctttatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcacttcttgaaactattgaaacatcgtt |
7100674 |
T |
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| Q |
409 |
gatttctttggtcatattctctcaaaactatgcttcttc |
447 |
Q |
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| T |
7100673 |
gatttctttggtcatattctctcaaaactatgcttcttc |
7100635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 207 - 447
Target Start/End: Complemental strand, 7087263 - 7087023
Alignment:
| Q |
207 |
catcggaatttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggt |
306 |
Q |
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| T |
7087263 |
catcggaatttcaatgttcagttcctcaaagtgacaagcatgatgtctttgttagctttagaggtctggacatccgtgaaggttttcttagtcatttggt |
7087164 |
T |
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| Q |
307 |
tgaagctctatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatcc |
406 |
Q |
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| T |
7087163 |
tgaagctttatctcgaaaggaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcactttttgaagctattgaaacatct |
7087064 |
T |
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| Q |
407 |
ttgatttctttggtcatattctctcaaaactatgcttcttc |
447 |
Q |
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| T |
7087063 |
tcaatttcattagtcatattctctcaaaactatgcttcttc |
7087023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 215 - 447
Target Start/End: Complemental strand, 7070189 - 7069957
Alignment:
| Q |
215 |
tttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctc |
314 |
Q |
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||||||| |||||||||||||| | ||||| ||||||| |||||||||||| | |||| |||||||||||||| ||||||| |||||| || ||||| |
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| T |
7070189 |
tttcaatcttctgttcctcaaattcacaagtatgatgtctttgttagctttcggggtccagatatccgtgaagtttttcttcctcatttgattaaagctt |
7070090 |
T |
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| Q |
315 |
tatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttc |
414 |
Q |
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| T |
7070089 |
tttctcaaaagaaaattgtttactttgtagactataagcttacaaaaggaaatgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttc |
7069990 |
T |
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| Q |
415 |
tttggtcatattctctcaaaactatgcttcttc |
447 |
Q |
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| T |
7069989 |
attagtcatattctctcaaaactatgcttcttc |
7069957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 7087389 - 7087320
Alignment:
| Q |
129 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttat |
198 |
Q |
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| T |
7087389 |
agtagagacacaaaggaagatccacaatgcacaatattaatcttgtattttttgtttgtctcttgtttat |
7087320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 7070331 - 7070253
Alignment:
| Q |
118 |
atcttatgtatagtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatc |
199 |
Q |
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| T |
7070331 |
atcttatgtagagtagagagacaaaggaaaatccacaatgcac---attaatcgtgcattttttgtttgtcttttgtttatc |
7070253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 4220850 - 4220813
Alignment:
| Q |
410 |
atttctttggtcatattctctcaaaactatgcttcttc |
447 |
Q |
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| T |
4220850 |
atttcattggtcatattctctgaaaactatgcttcttc |
4220813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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