View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_high_5 (Length: 319)
Name: NF6147_high_5
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 46706765 - 46706891
Alignment:
| Q |
99 |
aggacaagaacattaaagtaaatttgctaaaaaatagtaaaggaaatcaacaaccaaggaacataatcgtttatattgcttgaaatgatttaatacattt |
198 |
Q |
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| T |
46706765 |
aggacaagaacattaaagtaaatttgctaaaaaatagtaaaggaaatcaacaaccaaggaacataatcgtttatattgcttgaaatgatttaatacattt |
46706864 |
T |
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| Q |
199 |
gcagaaatcgttatcaatgttatctgc |
225 |
Q |
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| T |
46706865 |
gcagaaatcgttatcaatgttatctgc |
46706891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 46706661 - 46706740
Alignment:
| Q |
2 |
tataaatataaagcatgcgattcggatccaacggataccatgacacatttttccaagaatatagaatttctctaaatact |
81 |
Q |
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| T |
46706661 |
tataaatataaagcatgcgatttggatccaacggataccataacacatttttccaagaatatagaatttctctaaatact |
46706740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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