View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_high_8 (Length: 257)
Name: NF6147_high_8
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 4191931 - 4191706
Alignment:
| Q |
7 |
atgtcgaagaatatgagagggaatgttgtggtttgtgttgatgattggaggaacaacattgatgtgtttatgagttttgatattgttgttgttgaaagcc |
106 |
Q |
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| T |
4191931 |
atgtcgaagaaagtgagagggaatgttgtcgtttgtgttgatgattggaggaacaacattgatgtgttcatgagttttgatattgttgttattgaaagcc |
4191832 |
T |
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| Q |
107 |
atacgagataaaggaagtgttgtttgattaaaatttaatagctttgaatgattagaagaaaccttatcctaatcgtaataaataaactctgattgaaagg |
206 |
Q |
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| T |
4191831 |
atacgagataaaggaagtgttgtttgattaaaatttcttagctttgaatgattagaagaaagcttatcgtaatcgtaatagataaactctgattgaaagg |
4191732 |
T |
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| Q |
207 |
aaacaaaagctcacgtggaaaatatg |
232 |
Q |
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| T |
4191731 |
aaacaaaagctcacgtggaaaatatg |
4191706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 4191510 - 4191425
Alignment:
| Q |
81 |
ttttgatattgttgttgttgaaagccatacgagataaaggaagtgttgtttgattaaaatttaatagctttgaatgattagaagaaa |
167 |
Q |
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| T |
4191510 |
ttttgatatttttgttgttgaaagccatatgagataaa-gaagtgttgtttgaattaaatttctaagctttgaatgattagaagaaa |
4191425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 4190973 - 4190930
Alignment:
| Q |
196 |
tgattgaaaggaaacaaaagctcacgtggaaaatatgaggcttt |
239 |
Q |
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| T |
4190973 |
tgattgcaagggaacaaaagctcacgtggaaaatatgaggcttt |
4190930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 4188791 - 4188691
Alignment:
| Q |
7 |
atgtcgaagaatatgagagggaatgttgtggtttgtgttgatgattggaggaacaacattgatgtgtttatgagttttgatattgttgttgttgaaagcc |
106 |
Q |
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||||||||||| ||| ||| | |||||| ||||| ||||||||| | ||||||||| |||| ||||| ||| ||||||||||||| ||||| || ||| |
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| T |
4188791 |
atgtcgaagaaagtgaaaggaattgttgtagtttgggttgatgat-gaaggaacaactttgaagtgttcatggattttgatattgttcttgttaaatgcc |
4188693 |
T |
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| Q |
107 |
at |
108 |
Q |
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|| |
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| T |
4188692 |
at |
4188691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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