View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6147_low_1 (Length: 531)

Name: NF6147_low_1
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6147_low_1
NF6147_low_1
[»] chr4 (25 HSPs)
chr4 (342-498)||(26280417-26280578)
chr4 (62-125)||(26281177-26281240)
chr4 (62-125)||(11108360-11108423)
chr4 (62-125)||(11816681-11816744)
chr4 (21-125)||(11815888-11815992)
chr4 (62-125)||(43630249-43630312)
chr4 (21-125)||(40680494-40680596)
chr4 (18-125)||(50282859-50282963)
chr4 (62-125)||(31081630-31081693)
chr4 (62-125)||(45044436-45044499)
chr4 (62-125)||(45046835-45046898)
chr4 (62-118)||(44182630-44182686)
chr4 (62-118)||(53596083-53596139)
chr4 (62-125)||(9087287-9087350)
chr4 (62-125)||(44183733-44183796)
chr4 (18-125)||(24297088-24297190)
chr4 (62-118)||(2734865-2734921)
chr4 (66-125)||(13631726-13631785)
chr4 (62-125)||(26280142-26280204)
chr4 (66-105)||(31081406-31081445)
chr4 (62-116)||(9086361-9086415)
chr4 (234-269)||(26280309-26280344)
chr4 (62-116)||(40681437-40681491)
chr4 (62-124)||(50281747-50281809)
chr4 (62-123)||(13630170-13630231)
[»] chr7 (18 HSPs)
chr7 (404-498)||(18297517-18297612)
chr7 (18-149)||(18297179-18297309)
chr7 (21-149)||(17278427-17278554)
chr7 (21-149)||(30765696-30765823)
chr7 (21-125)||(14681925-14682028)
chr7 (18-118)||(42753938-42754037)
chr7 (63-125)||(25443066-25443128)
chr7 (21-125)||(16955959-16956061)
chr7 (21-124)||(14682922-14683024)
chr7 (62-125)||(30474344-30474407)
chr7 (62-125)||(30475097-30475160)
chr7 (63-125)||(17238565-17238627)
chr7 (228-270)||(18297386-18297428)
chr7 (62-124)||(25445007-25445068)
chr7 (62-116)||(30766620-30766674)
chr7 (342-376)||(18297503-18297537)
chr7 (342-395)||(4156232-4156285)
chr7 (62-107)||(17236132-17236177)
[»] chr2 (19 HSPs)
chr2 (18-125)||(16330765-16330872)
chr2 (18-124)||(8885683-8885788)
chr2 (63-125)||(12601307-12601369)
chr2 (63-149)||(28189516-28189602)
chr2 (21-125)||(8029936-8030039)
chr2 (62-125)||(8892988-8893051)
chr2 (18-125)||(12602524-12602630)
chr2 (62-125)||(19298496-19298559)
chr2 (63-125)||(40469024-40469086)
chr2 (18-115)||(16329770-16329866)
chr2 (62-125)||(10709291-10709354)
chr2 (67-125)||(29519231-29519289)
chr2 (62-125)||(20685697-20685760)
chr2 (62-125)||(29519973-29520036)
chr2 (21-111)||(18950764-18950852)
chr2 (62-116)||(20686609-20686663)
chr2 (62-116)||(28190421-28190475)
chr2 (62-116)||(40468114-40468168)
chr2 (67-111)||(3093265-3093309)
[»] chr5 (20 HSPs)
chr5 (18-125)||(24042606-24042712)
chr5 (62-124)||(24041806-24041868)
chr5 (62-125)||(13823768-13823831)
chr5 (62-125)||(13824573-13824636)
chr5 (62-124)||(19797732-19797794)
chr5 (62-125)||(23082606-23082669)
chr5 (62-125)||(38384936-38384999)
chr5 (62-149)||(6794682-6794769)
chr5 (18-118)||(14347426-14347523)
chr5 (18-118)||(30645661-30645760)
chr5 (21-125)||(42766845-42766948)
chr5 (62-125)||(38385728-38385791)
chr5 (62-125)||(42767620-42767683)
chr5 (63-125)||(16920073-16920135)
chr5 (18-118)||(28905391-28905490)
chr5 (18-118)||(28941786-28941885)
chr5 (21-125)||(37192399-37192502)
chr5 (18-115)||(19798657-19798753)
chr5 (62-118)||(37191661-37191717)
chr5 (62-118)||(39548534-39548590)
[»] chr8 (7 HSPs)
chr8 (62-125)||(44553196-44553259)
chr8 (62-125)||(13364117-13364180)
chr8 (18-118)||(22594343-22594442)
chr8 (63-118)||(16906398-16906453)
chr8 (62-116)||(13463084-13463138)
chr8 (21-125)||(13462134-13462236)
chr8 (66-111)||(9319283-9319328)
[»] chr1 (28 HSPs)
chr1 (18-125)||(51241749-51241855)
chr1 (342-498)||(968312-968484)
chr1 (21-125)||(7964141-7964245)
chr1 (21-118)||(24326610-24326706)
chr1 (21-118)||(24332248-24332344)
chr1 (21-125)||(31698212-31698314)
chr1 (21-125)||(29022476-29022579)
chr1 (62-125)||(967959-968022)
chr1 (67-125)||(7965436-7965494)
chr1 (67-125)||(31697188-31697246)
chr1 (62-124)||(36142178-36142240)
chr1 (63-125)||(50124528-50124590)
chr1 (67-125)||(51242904-51242962)
chr1 (18-118)||(16659838-16659937)
chr1 (21-118)||(29021610-29021706)
chr1 (62-118)||(38658810-38658866)
chr1 (21-125)||(49652426-49652529)
chr1 (62-125)||(969093-969154)
chr1 (21-124)||(52750190-52750291)
chr1 (68-125)||(50123769-50123826)
chr1 (18-125)||(5805904-5806011)
chr1 (63-118)||(52751497-52751552)
chr1 (62-116)||(35123133-35123187)
chr1 (62-116)||(36143071-36143125)
chr1 (18-107)||(24508235-24508323)
chr1 (76-125)||(47112176-47112225)
chr1 (76-117)||(47113049-47113090)
chr1 (65-110)||(1524080-1524125)
[»] scaffold0192 (1 HSPs)
scaffold0192 (62-124)||(14633-14695)
[»] chr3 (12 HSPs)
chr3 (62-149)||(34817399-34817486)
chr3 (21-125)||(32305197-32305300)
chr3 (21-118)||(54831883-54831979)
chr3 (62-118)||(17514643-17514699)
chr3 (21-125)||(42541127-42541230)
chr3 (64-112)||(46922004-46922052)
chr3 (18-125)||(52255457-52255564)
chr3 (62-124)||(52254371-52254433)
chr3 (62-117)||(32304300-32304355)
chr3 (63-117)||(17509533-17509587)
chr3 (64-118)||(53228146-53228200)
chr3 (342-395)||(44316979-44317032)
[»] chr6 (11 HSPs)
chr6 (18-118)||(902688-902786)
chr6 (21-125)||(12261417-12261520)
chr6 (62-149)||(16146145-16146232)
chr6 (18-118)||(901443-901541)
chr6 (21-124)||(8850245-8850348)
chr6 (21-149)||(27128872-27128999)
chr6 (63-125)||(10998793-10998855)
chr6 (62-116)||(12260514-12260568)
chr6 (342-395)||(6229361-6229414)
chr6 (62-123)||(28865667-28865727)
chr6 (76-112)||(27129819-27129855)
[»] scaffold0202 (1 HSPs)
scaffold0202 (62-118)||(22139-22195)
[»] scaffold0150 (1 HSPs)
scaffold0150 (18-122)||(38907-39010)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 342 - 498
Target Start/End: Original strand, 26280417 - 26280578
Alignment:
Q  342 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatccttnnnnnnnncaa----cccattttcggatctaaactcatccgtgttc 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    |||||||||||||||||||||||| ||||||    
T  26280417 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatccttaaaaaaaaaaaaaaacccattttcggatctaaactcatctgtgttc 26280516  T
Q  438 ttcatctcaaaaagca-aaagctttcaactgtgaagctttccaaagttctcatgttgattgc 498  Q
    | |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  26280517 tccatctcaaaaagcataaatctttcaactgtgaacctttccaaagttctcatgttgattgc 26280578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 26281240 - 26281177
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26281240 gattgtttgagtactttatctttatctccgttacctattttggtcccttccgttaaataaattc 26281177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 11108360 - 11108423
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  11108360 gattgtttgagtattttatctttacctccgttacctgttttggtcccttccgttaaataaattc 11108423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 11816744 - 11816681
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  11816744 gattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaaaaaattc 11816681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 11815888 - 11815992
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         |||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||| |    
T  11815888 tatttatttggtatcgctttggtcccttaactaaaaaaaaagattgtttgagtacattatctttatctccgttacctgttttggtcccttctgttaaaaa 11815987  T
Q  121 aattc 125  Q
    |||||    
T  11815988 aattc 11815992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 43630312 - 43630249
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||    
T  43630312 gattgtttgagtattttatctttatctccgttacctgttttggccccttatgttaaataaattc 43630249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 40680494 - 40680596
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| |    
T  40680494 tatttatttggtatcactttggtcccttaactaaaaaaa--gattgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgttaaaaa 40680591  T
Q  121 aattc 125  Q
    |||||    
T  40680592 aattc 40680596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 50282963 - 50282859
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          ||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||    
T  50282963 aagtatttatttggtatcgctttggtcccttaactaaaaaaa---attgtttaagtactttatctttatctctgttacctgttttggtcccttccgttaa 50282867  T
Q  118 ataaattc 125  Q
    | ||||||    
T  50282866 aaaaattc 50282859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 31081693 - 31081630
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||| |||| |||||||||||||    
T  31081693 gattgtttgagtactttatctttatccccgttaccgattttggtctcttctgttaaataaattc 31081630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 45044436 - 45044499
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||  |||||| ||||||    
T  45044436 gattgtttgagtactttatctttatctccgttacctgttttggtcccttatgttaaaaaaattc 45044499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 45046898 - 45046835
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  45046898 gattgtttgaatactttatctttatttccgttacctattttggtcccttctgttaaaaaaattc 45046835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 44182630 - 44182686
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||    
T  44182630 gattgtttgagtactttatctttatctccgttacctgttttggtcctttctgttaaa 44182686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 53596139 - 53596083
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  53596139 gattgtttgagtactttatctttatctccgttacctgttttggtctcttctgttaaa 53596083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 9087350 - 9087287
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||| |||||||| |||||||| |||||||||| || |||||||||||||||||||| ||||||    
T  9087350 gattctttgagtactttatcttcatctccgttatctgttttggtcccttccgttaaaaaaattc 9087287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 44183796 - 44183733
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||| |||| |||||||||||||| ||||||| ||||||||| |||||||||| ||||||    
T  44183796 gattgtttaagtactttatctttatctctgttacctgttttggtccattccgttaaaaaaattc 44183733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 24297190 - 24297088
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          |||||||||| ||||||||||||||||||||||   ||||||||| || ||||||    
T  24297190 aagtatttatttggtatcactttggtcccttaactaaaaaaaa--attgtttgagcattttatctttatctccgttac---ttttggtccttttcgttaa 24297096  T
Q  118 ataaattc 125  Q
    ||||||||    
T  24297095 ataaattc 24297088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 2734865 - 2734921
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||| |||| ||||||    
T  2734865 gattgtttgagtactttatcttcatctccgttacctgttttggtctcttctgttaaa 2734921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 13631785 - 13631726
Alignment:
Q  66 gtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||| ||||||||||| |||||||||| ||||||||| ||| |||||| ||||||    
T  13631785 gtttgagtaatttatctttatttccgttacctgttttggtcctttctgttaaaaaaattc 13631726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 26280142 - 26280204
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||  |||| ||||||||||||    
T  26280142 gattgtttgaatatttt-tctttatctccgttacctattttagtcttttccattaaataaattc 26280204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 31081406 - 31081445
Alignment:
Q  66 gtttgagtattttatctttatctccgttacctattttggt 105  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  31081406 gtttgagtactttatctttatctccgttacctattttggt 31081445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 9086361 - 9086415
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||    
T  9086361 gattgttttggtactttatctttatctccgttacatgttttggtcccttccgtta 9086415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 269
Target Start/End: Original strand, 26280309 - 26280344
Alignment:
Q  234 tcatcaccatgttcatcaaatttataaacataatga 269  Q
    |||||| |||||||||||||||||||||||||||||    
T  26280309 tcatcatcatgttcatcaaatttataaacataatga 26280344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 40681491 - 40681437
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||| ||||| | ||||||||||||||||||    
T  40681491 gattgttttggtactttatctttatctctgttacatgttttggtcccttccgtta 40681437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 50281747 - 50281809
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    |||| |||||||| ||||||||||||||||||| || ||||||||| ||  |||||| |||||    
T  50281747 gattctttgagtactttatctttatctccgttatctgttttggtcctttttgttaaaaaaatt 50281809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 13630170 - 13630231
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaat 123  Q
    |||||||| |||| ||||||||||||||| |||||| ||||||||  |||| ||||| ||||    
T  13630170 gattgtttaagtactttatctttatctccattacctgttttggtcatttccattaaaaaaat 13630231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 404 - 498
Target Start/End: Original strand, 18297517 - 18297612
Alignment:
Q  404 caacccattttcggatctaaactcatccgtgttcttcatctcaaaaagca-aaagctttcaactgtgaagctttccaaagttctcatgttgattgc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  18297517 caacccattttcggatctaaactcatccgtgttcttcatctcaaaaagcataaagctttcaactgtgaacctttccaaagttctcatgttgattgc 18297612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 18297179 - 18297309
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18297179 aagtatttatttggtatcgctttgatcccttaactaaaagaaa-gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 18297277  T
Q  118 ataaattcnnnnnnncgttagggtttgtatta 149  Q
    ||||||||       |||||||||||||||||    
T  18297278 ataaattcaaaaaaacgttagggtttgtatta 18297309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 17278427 - 17278554
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |    
T  17278427 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaa 17278525  T
Q  121 aattcnnnnnnncgttagggtttgtatta 149  Q
    |||||       |||||||||||||||||    
T  17278526 aattcaaaaaaacgttagggtttgtatta 17278554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 30765696 - 30765823
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |    
T  30765696 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaa 30765794  T
Q  121 aattcnnnnnnncgttagggtttgtatta 149  Q
    |||||       |||||||||||||||||    
T  30765795 aattcagaaaaacgttagggtttgtatta 30765823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 14681925 - 14682028
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |    
T  14681925 tatttatttggtatcgctttggtcccttaactaaaaataa-gattgtttaagtattttatctttatctccgttacctgttttggtcccttctgttaaaaa 14682023  T
Q  121 aattc 125  Q
    |||||    
T  14682024 aattc 14682028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 42753938 - 42754037
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||||||| ||||||         ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  42753938 aagtatttatttggtatcgctttgatcctttaactaaaaaaaa-gattgtttgagtactttatctttatctccgttacctgttttggtcccttctgttaa 42754036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 25443066 - 25443128
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  25443066 attgtttgagtactttatctttatctccgttatctgttttggtcccttctgttaaataaattc 25443128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 16955959 - 16956061
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||||||||||| ||||||||||||  |||||| |    
T  16955959 tatttatttggtatcactttggtcccttaactaaaaaaa--gattgtttgagtactttatctttatctccgttacctgttttggtcccttatgttaaaaa 16956056  T
Q  121 aattc 125  Q
    |||||    
T  16956057 aattc 16956061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 14683024 - 14682922
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         |||| |||||||||||||||||||||||||||| || ||||||||||||| |||||| |    
T  14683024 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattatttgagtattttatctttatctccgttatctgttttggtcccttctgttaaaaa 14682926  T
Q  121 aatt 124  Q
    ||||    
T  14682925 aatt 14682922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 30474344 - 30474407
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||| || |||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  30474344 gattgtttgaatactttatctttatctccgttacctattttggttccttctgttaaaaaaattc 30474407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 30475160 - 30475097
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||| ||||||    
T  30475160 gattgtttgagtactttatctttatctctgttatctattttggtcccttctgttaaaaaaattc 30475097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 17238627 - 17238565
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  17238627 attgtttaagtaatttatctttgtctccgttacctattttggtctcttccgttaaaaaaattc 17238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 18297386 - 18297428
Alignment:
Q  228 tctttttcatcaccatgttcatcaaatttataaacataatgag 270  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18297386 tctttttcatcaccatgttcatcaaatttataaacataatgag 18297428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 25445068 - 25445007
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    ||||||||| ||| |||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  25445068 gattgtttgtgtactttatctttatctccgttacatgttttggt-ccttccgttaaataaatt 25445007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 30766674 - 30766620
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||    
T  30766674 gattgttttggtactttatctttatctccgttacatgttttggtcccttccgtta 30766620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 18297503 - 18297537
Alignment:
Q  342 ccaatccttcactacaacccattttcggatttaaa 376  Q
    |||||||||||||||||||||||||||||| ||||    
T  18297503 ccaatccttcactacaacccattttcggatctaaa 18297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 4156285 - 4156232
Alignment:
Q  342 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatcctt 395  Q
    |||||||||||| | ||||||||||| ||| |||| |||||||||||| |||||    
T  4156285 ccaatccttcacaaaaacccattttcagatctaaacccatcatcatcattcctt 4156232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 17236132 - 17236177
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcc 107  Q
    ||||||||||||| ||||| |||||||||||||| | |||||||||    
T  17236132 gattgtttgagtactttatttttatctccgttacatgttttggtcc 17236177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 16330872 - 16330765
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  16330872 aagtatttatttggtatcgctttggtcccttaactaaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtcccttctgttaa 16330773  T
Q  118 ataaattc 125  Q
    ||||||||    
T  16330772 ataaattc 16330765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 8885683 - 8885788
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  8885683 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattatttgagtattttatatttatctccgttacctgttttggtcccttccgttaa 8885781  T
Q  118 ataaatt 124  Q
    |||||||    
T  8885782 ataaatt 8885788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 12601307 - 12601369
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  12601307 attgtttgagtattttatctttatcttcgttatctgttttggtcccttccgttaaataaattc 12601369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 28189516 - 28189602
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattcnnnnnnncgttagggtttgtatta 149  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||       |||||||||||||||||    
T  28189516 attgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaattcagaaaaacgttagggtttgtatta 28189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 8030039 - 8029936
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |    
T  8030039 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaa 8029941  T
Q  121 aattc 125  Q
    |||||    
T  8029940 aattc 8029936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 8893051 - 8892988
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  8893051 gattatttgggtattttatctttatcttcgttacctattttggtctcttccgttaaataaattc 8892988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 12602630 - 12602524
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||||||||| |||||||| | ||||| ||||||||| |||||||||    
T  12602630 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtattttatatttatctctgctacctgttttggtcctttccgttaa 12602532  T
Q  118 ataaattc 125  Q
    ||||||||    
T  12602531 ataaattc 12602524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 19298559 - 19298496
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||| ||||||    
T  19298559 gattgtttgagtactttatcttcatcaccgttacctgttttggtcccttccgttaaaaaaattc 19298496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 40469086 - 40469024
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| ||||||    
T  40469086 attgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgttaaaaaaattc 40469024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 16329770 - 16329866
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgtt 115  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||| |||| || |||||||||||||||||    
T  16329770 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatctctgttatctgttttggtcccttccgtt 16329866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 10709354 - 10709291
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||  || |||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  10709354 gattgtttggatactttatcttgatctccgttacatgttttggtcccttccgttaaataaattc 10709291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 29519231 - 29519289
Alignment:
Q  67 tttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||| |||||||||||||||||||| | |||||||| ||||||||||| ||||||    
T  29519231 tttgagtactttatctttatctccgttacttgttttggtctcttccgttaaaaaaattc 29519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 20685697 - 20685760
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||| ||| ||||||||| |||||||| ||| ||||||| ||||||    
T  20685697 gattgtttgagtactttatcttcatcaccgttacctgttttggtctctttcgttaaaaaaattc 20685760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 29520036 - 29519973
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||  || |||||||||||||| ||||||| ||||||||||||| |||||| ||||||    
T  29520036 gattgtttggatactttatctttatctctgttacctgttttggtcccttctgttaaaaaaattc 29519973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 18950764 - 18950852
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttc 111  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||  ||||||| |||||||||||||    
T  18950764 tatttatttggtatcgctttggtcccttaactaaaaaaa--gattgtttgagtactttatctttatctatgttacctgttttggtcccttc 18950852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 20686663 - 20686609
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||    
T  20686663 gattgttttggtactttatctttatctccgttacatgttttggtcccttccgtta 20686609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 28190475 - 28190421
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||    
T  28190475 gattgttttggtactttatctttatctccgttacatgttttggtcccttccgtta 28190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 40468114 - 40468168
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||||| ||| | ||||||||||||||||||    
T  40468114 gattgttttggtactttatctttatctccgatacatgttttggtcccttccgtta 40468168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 3093265 - 3093309
Alignment:
Q  67 tttgagtattttatctttatctccgttacctattttggtcccttc 111  Q
    ||||| || ||||| |||||||||||||||| |||||||||||||    
T  3093265 tttgactactttatttttatctccgttacctgttttggtcccttc 3093309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 24042712 - 24042606
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24042712 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaa 24042614  T
Q  118 ataaattc 125  Q
    ||||||||    
T  24042613 ataaattc 24042606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 24041806 - 24041868
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24041806 gattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaataaatt 24041868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 13823768 - 13823831
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13823768 gattgtttaagtattttatctttatctccgttacctgttttggtcccttccgttaaataaattc 13823831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 13824636 - 13824573
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  13824636 gattgtttgagtattttatctttatctccgttacctgttttggtccattccgttaaataaattc 13824573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 19797732 - 19797794
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  19797732 gattgtttgagtattttatttttatctccgttacctgttttggtcccttctgttaaataaatt 19797794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 23082606 - 23082669
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  23082606 gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaattc 23082669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 38384936 - 38384999
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  38384936 gattgtttgagtactttatctttatctccgctacctgttttggtcccttccgttaaaaaaattc 38384999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 6794769 - 6794682
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattcnnnnnnncgttagggtttgtatta 149  Q
    ||||||||||||| |||||||| |||||||||| || |||||||||||||||||||| ||||||       |||||||||||||||||    
T  6794769 gattgtttgagtactttatcttcatctccgttatctgttttggtcccttccgttaaaaaaattcagaaaaacgttagggtttgtatta 6794682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 14347426 - 14347523
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          |||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  14347426 aagtatttatttggtatcgctttggtcccttaactaaaaaaa---attgtttgagtactttatctttatctccgttacctgttttggccccttccgttaa 14347522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 30645760 - 30645661
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  30645760 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaa 30645662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 42766845 - 42766948
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         |||||||||||||  |||| |||||||||||||||| |||||||||||||||||||| |    
T  42766845 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtacattatatttatctccgttacctgttttggtcccttccgttaaaaa 42766943  T
Q  121 aattc 125  Q
    |||||    
T  42766944 aattc 42766948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 38385791 - 38385728
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||  |||||| ||||||    
T  38385791 gattgtttgagtactttatctttatctccgttacctattttggtcctttatgttaaaaaaattc 38385728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 42767683 - 42767620
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||| ||||||    
T  42767683 gattgtttgagtactttatctttatctccattacctgttttggtcccttctgttaaaaaaattc 42767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 16920073 - 16920135
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||| ||||||||||||||| ||||||  |||||||||||| |||||||||||||    
T  16920073 attgtttgagtaatttatctttatctccattacctgatttggtcccttctgttaaataaattc 16920135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 28905490 - 28905391
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          |||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  28905490 aagtatttatttggtatcgctttggtcccttaactaaaaaaaaa-attgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaa 28905392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 28941885 - 28941786
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          |||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  28941885 aagtatttatttggtatcgctttggtcccttaactaaaaaaaaa-attgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaa 28941787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 37192502 - 37192399
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         |||| |||||||| ||||| |||||||| ||||||| |||||||||||||||||||| |    
T  37192502 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattatttgagtactttatatttatctctgttacctgttttggtcccttccgttaaaaa 37192404  T
Q  121 aattc 125  Q
    |||||    
T  37192403 aattc 37192399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 19798753 - 19798657
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgtt 115  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||| |||| || ||| |||||||||||||    
T  19798753 aagtatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatctctgttatctgtttcggtcccttccgtt 19798657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 37191661 - 37191717
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| ||||||||||||||  |||||| |||||||| |||| ||||||    
T  37191661 gattgtttgagtactttatctttatctctattacctgttttggtctcttctgttaaa 37191717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 39548590 - 39548534
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| |||||||| ||||| ||||||| |||||||| |||| ||||||    
T  39548590 gattgtttgagtactttatcttcatctctgttacctgttttggtctcttctgttaaa 39548534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 44553196 - 44553259
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44553196 gattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaataaattc 44553259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 13364117 - 13364180
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  13364117 gattgtttgagtattttatttttatccccgttacctgttttggtcccttccgttaaataaattc 13364180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 22594343 - 22594442
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  22594343 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaa 22594441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 16906453 - 16906398
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||| ||| ||||||    
T  16906453 attgtttgagtactttatatttatctccgttacctgttttggtccattctgttaaa 16906398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 13463138 - 13463084
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||    
T  13463138 gattgttttggtactttatctttatctccgttacatgttttggtcccttccgtta 13463084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 13462134 - 13462236
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||| |  |||||| |||||||||||||||||||| |    
T  13462134 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatcgca-ttacctgttttggtcccttccgttaaaaa 13462231  T
Q  121 aattc 125  Q
    |||||    
T  13462232 aattc 13462236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 9319328 - 9319283
Alignment:
Q  66 gtttgagtattttatctttatctccgttacctattttggtcccttc 111  Q
    ||||||||| ||||| |||||||| ||||||| |||||||||||||    
T  9319328 gtttgagtactttatttttatctctgttacctgttttggtcccttc 9319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 51241749 - 51241855
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  51241749 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtattttatctttacttccgttacctgttttggtcccttccgttaa 51241847  T
Q  118 ataaattc 125  Q
    ||||||||    
T  51241848 ataaattc 51241855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 342 - 498
Target Start/End: Original strand, 968312 - 968484
Alignment:
Q  342 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatccttnnnnnnnncaa----cccattttcggatctaaactca--------- 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    | ||||||||||||||||||||             
T  968312 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatccttaaaaaaaaaaaataactcattttcggatctaaactcaactgtgttg 968411  T
Q  429 --tccgtgttcttcatctcaaaaagca-aaagctttcaactgtgaagctttccaaagttctcatgttgattgc 498  Q
      || ||||||| |||||||||||||| ||| |||||||||||| | |||||||||||||||| |||||||||    
T  968412 aatctgtgttctccatctcaaaaagcataaatctttcaactgtggacctttccaaagttctcaagttgattgc 968484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 7964141 - 7964245
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |    
T  7964141 tatttatttggtatcgctttggtcccttaactaaaaaaaaagattgtttgaggattttatctttatctccgttacctgttttggtcccttccgtcaaaaa 7964240  T
Q  121 aattc 125  Q
    |||||    
T  7964241 aattc 7964245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 24326610 - 24326706
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||||| ||||| ||||||||||         |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24326610 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattatttgagtactttatctttatctccgttacctattttggtcccttccgttaaa 24326706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 24332344 - 24332248
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||||| ||||| ||||||||||         |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24332344 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattatttgagtactttatctttatctccgttacctattttggtcccttccgttaaa 24332248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 31698314 - 31698212
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||||||||||||||          |||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||    
T  31698314 tatttatttggtatcgctttgatcccttaactaaaaaaaa--attgtttgagtactttatctttatctccgttagctattttggtctcttctgttaaata 31698217  T
Q  121 aattc 125  Q
    |||||    
T  31698216 aattc 31698212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 29022579 - 29022476
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| |    
T  29022579 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttaagtactttatctttatctccgttacctgttttggtcccttccgttaaaaa 29022481  T
Q  121 aattc 125  Q
    |||||    
T  29022480 aattc 29022476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 967959 - 968022
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| ||||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  967959 gattgtttgagtactttatttttatctatgttacctattttggtctcttccgttaaataaattc 968022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 7965494 - 7965436
Alignment:
Q  67 tttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  7965494 tttgaggattttatctttatctccgttacctgttttggtcccttccgtcaaaaaaattc 7965436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 31697188 - 31697246
Alignment:
Q  67 tttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  31697188 tttgagtactttatctttatatctgttacctattttggtcccttctgttaaataaattc 31697246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 36142178 - 36142240
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||| |||||||||| |||||    
T  36142178 gattgtttaagtactttatctttatctccgttacctgttttggtcctttccgttaaaaaaatt 36142240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 50124590 - 50124528
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||| || |||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  50124590 attgtttgaatactttatctttatctccgttacctgttttggtcctttccgttaaaaaaattc 50124528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 51242962 - 51242904
Alignment:
Q  67 tttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||    
T  51242962 tttgagtattttatctttatctccgttacttgttatggtccattccgttaaataaattc 51242904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 16659937 - 16659838
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          |||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  16659937 aagtatttatttggtatcgctttggtcccttaactaaaaaaaaa-attgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaa 16659839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 29021610 - 29021706
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||    
T  29021610 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 29021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 38658866 - 38658810
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||    
T  38658866 gattgtttgagtactttatatttatctccgttacctgttttggtcccttctgttaaa 38658810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 49652426 - 49652529
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||||||| | ||||||||||||||||  |||||||||| |    
T  49652426 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatccctgttacctattttggtcttttccgttaaaaa 49652524  T
Q  121 aattc 125  Q
    |||||    
T  49652525 aattc 49652529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 969154 - 969093
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  969154 gattgtttgagtactttat-tttatctccgt-acctattttggtcccttccgttgaataaattc 969093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 52750190 - 52750291
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||| |    
T  52750190 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttat-tccgttacctattttggtccattctgttaaaaa 52750287  T
Q  121 aatt 124  Q
    ||||    
T  52750288 aatt 52750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 50123769 - 50123826
Alignment:
Q  68 ttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||| |||||| ||||||    
T  50123769 ttgagtactttatatttatttccgttacctattttggtcccttctgttaaaaaaattc 50123826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 5806011 - 5805904
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    ||||||||||||||||||  |||| ||||||||||         |||| ||| |||| |||||||||||||| |||| || |||||||| |||| |||||    
T  5806011 aagtatttatttggtatcgttttggtcccttaactaaaaaaaaagattttttcagtactttatctttatctctgttatctgttttggtctcttctgttaa 5805912  T
Q  118 ataaattc 125  Q
    ||||||||    
T  5805911 ataaattc 5805904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 52751552 - 52751497
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    |||||||||||| |||||||||||||| ||||| | |||| |||||||||||||||    
T  52751552 attgtttgagtactttatctttatctcagttacttgtttttgtcccttccgttaaa 52751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 35123187 - 35123133
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||||||||||||||||| |||||| | ||||||||||||||||||    
T  35123187 gattgttttggtattttatctttatcttcgttacatgttttggtcccttccgtta 35123133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 36143125 - 36143071
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  |||||||||||||||||||||||| | ||||||||| ||||||||    
T  36143125 gattgttttggtattttatctttatctccgttacatgttttggtccattccgtta 36143071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 24508235 - 24508323
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcc 107  Q
    ||||||||||||||||||  |||||||||||||||         |||| ||| |||| |||||||||||||||||||||| |||||||||    
T  24508235 aagtatttatttggtatcgttttgatcccttaactaaaaaaaa-gattatttaagtactttatctttatctccgttacctgttttggtcc 24508323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 47112176 - 47112225
Alignment:
Q  76 tttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| ||||||    
T  47112176 tttatcttcatctccgttacctgttttggtctcttccgttaaaaaaattc 47112225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 47113090 - 47113049
Alignment:
Q  76 tttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  47113090 tttatctttatctccgttacatgttttggtcccttccgttaa 47113049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 1524080 - 1524125
Alignment:
Q  65 tgtttgagtattttatctttatctccgttacctattttggtccctt 110  Q
    |||||||||| ||||||||||| |||||||||| ||||||| ||||    
T  1524080 tgtttgagtactttatctttatttccgttacctgttttggttcctt 1524125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 14695 - 14633
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  14695 gattgtttgagtattttatctttatctctgttacctgttttggtcccttccgttaaataaatt 14633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 34817399 - 34817486
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattcnnnnnnncgttagggtttgtatta 149  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||       |||||||||||||||||    
T  34817399 gattgtttgagtactttatctttatctccgttacctgttttggtcccttccgttaaaaaaattcaaaaaaacgttagggtttgtatta 34817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 32305300 - 32305197
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |    
T  32305300 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaa 32305202  T
Q  121 aattc 125  Q
    |||||    
T  32305201 aattc 32305197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 54831883 - 54831979
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||||| ||||| ||||||||||         |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  54831883 tatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtattttatctttatctctgttacctgttttggtcccttcagttaaa 54831979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 17514699 - 17514643
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  17514699 gattgtttgagtactttatctttatctccattacctgttttggtcccttccgttaaa 17514643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 42541230 - 42541127
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||| ||||||| ||||||||||||| |||||| |    
T  42541230 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctctgttacctgttttggtcccttctgttaaaaa 42541132  T
Q  121 aattc 125  Q
    |||||    
T  42541131 aattc 42541127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 46922052 - 46922004
Alignment:
Q  64 ttgtttgagtattttatctttatctccgttacctattttggtcccttcc 112  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  46922052 ttgtttgattattttatatttatctccgttacctgttttggtcccttcc 46922004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 52255564 - 52255457
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          ||||||| |||| |||||||||||||| | | ||| ||||||||| |||||||||    
T  52255564 aagtatttatttggtatcgctttggtcccttaacttaaaaaaaaaattgtttaagtactttatctttatctctgatgcctgttttggtccattccgttaa 52255465  T
Q  118 ataaattc 125  Q
    | ||||||    
T  52255464 aaaaattc 52255457  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 52254371 - 52254433
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 124  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||| ||  |||||| |||||    
T  52254371 gattgtttgagtactttatctttatctccgttatctgttttggtcctttatgttaaaaaaatt 52254433  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 32304300 - 32304355
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    ||||||||  ||| |||||||||||||||||||| | ||||||||| |||||||||    
T  32304300 gattgttttggtactttatctttatctccgttacatgttttggtcctttccgttaa 32304355  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 17509533 - 17509587
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||| ||| |||||||||||||||||||| | |||| ||| ||||||||||    
T  17509533 attgtttgggtactttatctttatctccgttacatgttttagtctcttccgttaa 17509587  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 53228200 - 53228146
Alignment:
Q  64 ttgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    |||||| |||| ||||||||||||||| | |||| ||||||||||||| ||||||    
T  53228200 ttgtttaagtactttatctttatctccctaacctgttttggtcccttctgttaaa 53228146  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 44316979 - 44317032
Alignment:
Q  342 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatcctt 395  Q
    |||||||||||| | ||||||||||| ||| |||| |||||||||||| |||||    
T  44316979 ccaatccttcacaaaaacccattttcagatctaaacccatcatcatcattcctt 44317032  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 902786 - 902688
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  902786 aagtatttatttggtatcgctttggtcccttaactaaaaaaa--gattgtttaagtactttatctttatctccgttacctattttggtcctttccgttaa 902689  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 12261520 - 12261417
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |    
T  12261520 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaa 12261422  T
Q  121 aattc 125  Q
    |||||    
T  12261421 aattc 12261417  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 16146145 - 16146232
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattcnnnnnnncgttagggtttgtatta 149  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| ||||||       |||||||||||||||||    
T  16146145 gattgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgttaaaaaaattcaaaaaaacgttagggtttgtatta 16146232  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 901443 - 901541
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||          ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  901443 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa--attgtttaagtactttatctttatctccgttacctattttggtcctttccgttaa 901540  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 8850245 - 8850348
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||| ||||| ||||| ||||||||||         ||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||| |    
T  8850245 tatttatttagtatcactttggtcccttaactaaaaaaaaagattgtttgagtactttatttttatctccgttacctattttggtcccttctattaaaaa 8850344  T
Q  121 aatt 124  Q
    ||||    
T  8850345 aatt 8850348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 27128872 - 27128999
Alignment:
Q  21 tatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaata 120  Q
    ||||||||||||||| ||||| ||||||||||         ||||||||||||| |||||||| ||||| ||||||| ||||||||| ||||||| || |    
T  27128872 tatttatttggtatcactttggtcccttaactaaaaaaaa-gattgtttgagtactttatcttcatctctgttacctgttttggtccattccgttcaaaa 27128970  T
Q  121 aattcnnnnnnncgttagggtttgtatta 149  Q
    |||||       |||||||||||||||||    
T  27128971 aattcagaaaaacgttagggtttgtatta 27128999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 10998793 - 10998855
Alignment:
Q  63 attgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaattc 125  Q
    |||||||||||| ||||| |||||||||||||||| |||||||| |||| |||||| ||||||    
T  10998793 attgtttgagtactttatttttatctccgttacctgttttggtctcttctgttaaaaaaattc 10998855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 12260514 - 12260568
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 116  Q
    ||||||||  ||| |||||||||||||| ||||| | ||||||||||||||||||    
T  12260514 gattgttttggtactttatctttatctctgttacatgttttggtcccttccgtta 12260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 6229414 - 6229361
Alignment:
Q  342 ccaatccttcactacaacccattttcggatttaaatccatcatcatcaatcctt 395  Q
    |||||||||||| | ||||||||||| ||| |||| |||||||||||| |||||    
T  6229414 ccaatccttcacaaaaacccattttcagatctaaacccatcatcatcattcctt 6229361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 28865667 - 28865727
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaat 123  Q
    ||||||||||||| | ||||||||||| |||||||| ||||||||||||  |||||| ||||    
T  28865667 gattgtttgagtactatatctttatct-cgttacctgttttggtcccttttgttaaaaaaat 28865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 27129855 - 27129819
Alignment:
Q  76 tttatctttatctccgttacctattttggtcccttcc 112  Q
    |||||||||||||||||||| | ||||||||||||||    
T  27129855 tttatctttatctccgttacatgttttggtcccttcc 27129819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 22195 - 22139
Alignment:
Q  62 gattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaa 118  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||    
T  22195 gattgtttgagtactttatttttatctctgttacctgttttggtcccttccgttaaa 22139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 38907 - 39010
Alignment:
Q  18 aagtatttatttggtatctctttgatcccttaactnnnnnnnnngattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaa 117  Q
    |||||||||||||||||| ||||| ||||||||||         ||||||||||||| ||||||||||||||||||  || ||||||||| ||| |||||    
T  38907 aagtatttatttggtatcgctttggtcccttaactaaaaaaaa-gattgtttgagtactttatctttatctccgttgtctgttttggtccattctgttaa 39005  T
Q  118 ataaa 122  Q
    |||||    
T  39006 ataaa 39010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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