View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_low_10 (Length: 262)
Name: NF6147_low_10
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 42953407 - 42953649
Alignment:
| Q |
11 |
cacagacaatggaaagtaaatcactcacccttcaagcagtagagtgcaagcatcgtttcaaatttgcggtaagacatgttaagttaaaagtgatgtcacg |
110 |
Q |
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| T |
42953407 |
cacaaacaatggaaagtaaatcactcacccttcaagcagtagagtgcaagcatcgtttcaaatttgcggtaagacatgttaagttaaaagtgatgtcacg |
42953506 |
T |
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| Q |
111 |
aagaaacaatcagaaggaatgaggatggcaagtatatgcatgcgcaggccacacctatatata---caatagcttagagtttgcatgggaagctgaaaca |
207 |
Q |
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| T |
42953507 |
aagaaacaatcagaaggaatgaggatggcaagtatatgcatgcgcaggccacacctatatatagagcaatagcttagagtttgcatgggaagctgaaaca |
42953606 |
T |
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| Q |
208 |
taaa-gtgatgcatttattaaagtagttggaataacaaaggtc |
249 |
Q |
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| T |
42953607 |
taaacgtgatgcatttattgaagtagttggaataacaaaggtc |
42953649 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 11483741 - 11483794
Alignment:
| Q |
209 |
aaagtgatgcatttattaaagtagttggaataacaaaggtcgcatgtgttcatt |
262 |
Q |
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| T |
11483741 |
aaagtgatgcattgattgaagtagttggaataacaaaggtcacatttgctcatt |
11483794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 40294403 - 40294463
Alignment:
| Q |
32 |
cactcacccttcaagcagtagagtgcaagcatcgtttcaaatttgcggtaagacatgttaa |
92 |
Q |
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| T |
40294403 |
cactgacctttcaagcaatgtagtgcaagcaacgtttcaaattaacggtaagacatgttaa |
40294463 |
T |
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