View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_low_13 (Length: 242)
Name: NF6147_low_13
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_low_13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 868283 - 868418
Alignment:
| Q |
106 |
gcatgcatcaatatattcgggggaagctagctcgttgcatatacgaccttgatcaacaactagaatatggaacaatagcatgtcgcacacaaatggagtt |
205 |
Q |
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| T |
868283 |
gcatgcatcaatatattcgggggaagctagctcgttgcatatacgaccttgatcaacaactagaatatggaacaatagcatgtcgcacacaaatggagtt |
868382 |
T |
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| Q |
206 |
gcaacaaacgactcccacaattgttattttgtgtcac |
242 |
Q |
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| T |
868383 |
gcaac-aacgactcccacaattgatattttgtgtcac |
868418 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 868218 - 868248
Alignment:
| Q |
16 |
catcacctacatgtttcatctgatccaccaa |
46 |
Q |
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| T |
868218 |
catcacctacatgtttcatctgatccaccaa |
868248 |
T |
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