View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_low_14 (Length: 233)
Name: NF6147_low_14
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 35364021 - 35364229
Alignment:
| Q |
10 |
acatcatcaatgaataatacagtaatttgatagttctacttttcatgttctttatactaaatcatgttctaaattgcagttgtgatacaatacaagtctt |
109 |
Q |
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| T |
35364021 |
acatcatcaatgaataatagagtaatttgatagttctacttttcatgttctttatactaaatcatgttctaaattgcagttgtgatacaatgcaagtctt |
35364120 |
T |
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| Q |
110 |
aataattttagagaaatgcaaacaaatgcaaccgac--atggctacatttatagttgcaatgtcattgcaaaaacctttaaaaccatataaactatcatg |
207 |
Q |
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| T |
35364121 |
aataattttagagaaatgcaaacaaatgcaaccgacatatggctacatttatagttgcaatgtcattgcaaaaacatttaaaactatataaactatcatg |
35364220 |
T |
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| Q |
208 |
cctaatact |
216 |
Q |
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| T |
35364221 |
cctaatact |
35364229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 35335414 - 35335473
Alignment:
| Q |
149 |
gctacatttatagttgcaatgtcattgcaaaaacctttaaaaccatataaactatcatgc |
208 |
Q |
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| T |
35335414 |
gctacaattacagttgcaatgtcattgcaaagatctttaaaaccattaaaactatcatgc |
35335473 |
T |
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