View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6147_low_4 (Length: 435)
Name: NF6147_low_4
Description: NF6147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6147_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 10569203 - 10569603
Alignment:
| Q |
1 |
cactcaagcaagaaaaaatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacagtagcatcaatc |
100 |
Q |
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| T |
10569203 |
cactcaagcaagaaaagatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacagtagcatcaatc |
10569302 |
T |
|
| Q |
101 |
tcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttataaataaaacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
10569303 |
tcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttttaaataaaccta |
10569402 |
T |
|
| Q |
201 |
tgatgatggtaacacttnnnnnnngctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacgcatatcatgtt |
300 |
Q |
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| T |
10569403 |
tgatgatggtaacacttaaaaaaagctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacgcatatcatgtt |
10569502 |
T |
|
| Q |
301 |
aggtgcaacgacaacagcaagaacgtgatcctgtcaaacacaattacaacgaacagcgtcaactatatgctttctatgcaagacaggagatagattacac |
400 |
Q |
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| T |
10569503 |
aggtgc---------------aacgtgatcctgtcaaacacaatgacaacgaacagcgtcaactatatgttttctatgcaagacaggagatagattacac |
10569587 |
T |
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| Q |
401 |
aaggatatggtaagaa |
416 |
Q |
| |
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| T |
10569588 |
aaggatatggtaagaa |
10569603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 101 - 416
Target Start/End: Original strand, 10551768 - 10552087
Alignment:
| Q |
101 |
tcagtttaaaacaaaaaa-ttacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttataaataaaact |
199 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
10551768 |
tcagtttaaaacaaaaaaattacaaaataattccttaataa-ttcccaatacctcatactttcataagctaatagtatcgaaatccttaaaaataaaaca |
10551866 |
T |
|
| Q |
200 |
atgatgatggtaacacttnnnnnnngctaaatct----ttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacgcatatc |
295 |
Q |
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|||||||||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
10551867 |
atgatgatggtaacacttaaaaaaagcaaaatatatatttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctggaacacatatc |
10551966 |
T |
|
| Q |
296 |
atgttaggtgcaacgacaacagcaagaacgtgatcctgtcaaacacaattacaacgaacagcgtcaactatatgctttctatgcaagacaggagatagat |
395 |
Q |
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| T |
10551967 |
atgttaggtgcaacgacaacagcaagaacgtgatcctgtcaaacacaatcacaacgaacaccgtcaactatatgttttctatgcaagacaggagatatat |
10552066 |
T |
|
| Q |
396 |
tacacaaggatatggtaagaa |
416 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
10552067 |
tacacaaggatatggtaagaa |
10552087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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