View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6148_high_1 (Length: 281)
Name: NF6148_high_1
Description: NF6148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6148_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 11850198 - 11849946
Alignment:
| Q |
19 |
aagtactcggggtctaagtaaccaaaagtaccttgaactactgtggtaaggtgagtagcttcaattgaaattattcttgatactccaaaatccgctaatt |
118 |
Q |
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| T |
11850198 |
aagtactcagggtctaagtaaccaaaagtaccttgaactactgtggtaaggtgagtagcttcaattgaaattattcttgatactccgaaatctgctaatt |
11850099 |
T |
|
| Q |
119 |
ttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaaataatgctccggc |
218 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11850098 |
ttggcctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaaataatgctccagc |
11849999 |
T |
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| Q |
219 |
gatttcagtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcat |
271 |
Q |
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| T |
11849998 |
aatttccgtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcat |
11849946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 11845469 - 11845222
Alignment:
| Q |
19 |
aagtactcggggtctaagtaaccaaaagtaccttgaactactgtggtaaggtgagtagcttcaattgaaattattcttgatactccaaaatccgctaatt |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||| |
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| T |
11845469 |
aagtactcagggtctaagtaaccaaaagtaccttgaactaccgtggtaaggtgagtagcttcaattgatattattcttgatgttccgaaatctgctaatt |
11845370 |
T |
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| Q |
119 |
ttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaaataatgctccggc |
218 |
Q |
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| T |
11845369 |
ttgccctatacttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaaataatgctccggc |
11845270 |
T |
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| Q |
219 |
gatttcagtaccaattctcaaacgcatgtcccatgtcattggtatgtc |
266 |
Q |
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| T |
11845269 |
gatttcagttgcaattctcaaacgcatgtcccatgtcattggtatgtc |
11845222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 718478 - 718434
Alignment:
| Q |
132 |
ttcatcaagtagtatatttgtagatttgatatctctatgataaat |
176 |
Q |
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|||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
718478 |
ttcatcaagtagtatattggtagctttgatatccctatgataaat |
718434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 40598094 - 40598037
Alignment:
| Q |
130 |
ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40598094 |
ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg |
40598037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 40598154 - 40598097
Alignment:
| Q |
130 |
ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg |
187 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40598154 |
ttttcatctagtagtatatttgtagatttgatatctctatgataaatgggttgagatg |
40598097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 40598034 - 40597994
Alignment:
| Q |
130 |
ttttcatcaagtagtatatttgtagatttgatatctctatg |
170 |
Q |
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| T |
40598034 |
ttttcatcaagtagtatatttgtagatttgacatctctatg |
40597994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 36870911 - 36870952
Alignment:
| Q |
134 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
175 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
36870911 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
36870952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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