View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6149_high_19 (Length: 242)

Name: NF6149_high_19
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6149_high_19
NF6149_high_19
[»] chr6 (48 HSPs)
chr6 (8-224)||(30059946-30060162)
chr6 (8-173)||(29887296-29887461)
chr6 (8-173)||(28926382-28926547)
chr6 (8-163)||(24730854-24731009)
chr6 (32-173)||(29835238-29835379)
chr6 (32-173)||(29894576-29894717)
chr6 (8-170)||(29073762-29073924)
chr6 (8-170)||(29078526-29078688)
chr6 (8-170)||(29106335-29106497)
chr6 (32-173)||(29866672-29866813)
chr6 (8-173)||(30061830-30061995)
chr6 (8-163)||(24890091-24890246)
chr6 (8-173)||(29211228-29211393)
chr6 (11-173)||(24263587-24263749)
chr6 (8-173)||(29905638-29905803)
chr6 (8-173)||(30126890-30127055)
chr6 (8-163)||(29882434-29882589)
chr6 (8-163)||(29909590-29909745)
chr6 (16-161)||(24886413-24886557)
chr6 (8-173)||(30118576-30118741)
chr6 (8-163)||(29903245-29903400)
chr6 (8-163)||(29357824-29357979)
chr6 (10-169)||(29929274-29929433)
chr6 (10-163)||(29116262-29116415)
chr6 (10-173)||(29085019-29085182)
chr6 (8-173)||(29348433-29348598)
chr6 (10-173)||(29889731-29889894)
chr6 (8-100)||(29898076-29898168)
chr6 (16-151)||(29946444-29946579)
chr6 (10-131)||(29099344-29099465)
chr6 (8-112)||(29366317-29366421)
chr6 (8-116)||(29876824-29876932)
chr6 (8-108)||(30999838-30999938)
chr6 (49-173)||(29949732-29949856)
chr6 (8-102)||(24271853-24271947)
chr6 (8-130)||(30149526-30149648)
chr6 (8-161)||(25451117-25451270)
chr6 (40-106)||(16702057-16702123)
chr6 (115-173)||(24271799-24271857)
chr6 (88-163)||(29912051-29912126)
chr6 (88-163)||(29914071-29914146)
chr6 (49-160)||(29953542-29953653)
chr6 (24-125)||(30053442-30053543)
chr6 (64-107)||(15727090-15727133)
chr6 (166-224)||(30061644-30061705)
chr6 (166-223)||(29835504-29835561)
chr6 (166-223)||(29866938-29866995)
chr6 (166-223)||(29887586-29887643)
[»] scaffold0573 (1 HSPs)
scaffold0573 (8-173)||(4136-4301)
[»] scaffold0237 (1 HSPs)
scaffold0237 (8-163)||(22342-22497)
[»] chr3 (2 HSPs)
chr3 (9-127)||(24219116-24219234)
chr3 (7-100)||(24226818-24226911)
[»] chr2 (1 HSPs)
chr2 (16-147)||(15062737-15062868)
[»] chr1 (4 HSPs)
chr1 (6-118)||(10130134-10130246)
chr1 (8-107)||(17251312-17251411)
chr1 (8-133)||(19490249-19490374)
chr1 (24-107)||(41316274-41316358)
[»] scaffold0054 (1 HSPs)
scaffold0054 (8-72)||(53532-53596)
[»] scaffold0572 (1 HSPs)
scaffold0572 (8-107)||(3232-3331)
[»] chr7 (1 HSPs)
chr7 (68-173)||(3643096-3643201)
[»] scaffold0014 (2 HSPs)
scaffold0014 (24-172)||(137389-137537)
scaffold0014 (64-106)||(121382-121424)
[»] scaffold0019 (1 HSPs)
scaffold0019 (64-107)||(126024-126067)
[»] scaffold0429 (1 HSPs)
scaffold0429 (24-107)||(6211-6294)
[»] scaffold0051 (1 HSPs)
scaffold0051 (8-107)||(47804-47903)
[»] chr8 (1 HSPs)
chr8 (64-125)||(9782594-9782655)
[»] scaffold0654 (1 HSPs)
scaffold0654 (66-106)||(1122-1162)
[»] scaffold0086 (1 HSPs)
scaffold0086 (58-102)||(31220-31264)
[»] chr4 (1 HSPs)
chr4 (64-112)||(44262489-44262537)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 30060162 - 30059946
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  30060162 tgagatgaatgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcaggttgacaaggcaattgcatta 30060063  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatggagccttggctttgctatcaaaaatgaaggacaata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060062 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatggagccttggctttgctatcaaaaatgaaggacaata 30059963  T
Q  208 attgctatccaaatgct 224  Q
    |||||||||||||||||    
T  30059962 attgctatccaaatgct 30059946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 29887296 - 29887461
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||  |||||||||||||||| |||    
T  29887296 tgagatgcatgatagaggtcaaccacctgatataattacttacagttctttattagatgctttatgcaaaaaccatcaggttgacaaggcaattgcgtta 29887395  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  29887396 ttaacaaatttgaaagaccagggtattcgaccaaatatgtacacatacactattcttattgatgga 29887461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 28926547 - 28926382
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| |||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  28926547 tgagatgcatgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcatta 28926448  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    |||||||||||||||||||||||| | | ||||||||| |||||| |||||||||| ||| |||||    
T  28926447 ttaacaaaattgaaagaccagggtcttcaaccaaatatgtacacatacactattcttattaatgga 28926382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 24730854 - 24731009
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||| ||||||| ||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  24730854 tgagatgcatgatagaggtcaaccacctaatataataacttacaattctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcatta 24730953  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||||| ||||||||||||||||| |||||| |||| |||||| ||||| ||||    
T  24730954 ttaacaaatttgaaagaccagggtattcgaccagatatgtacacatacactgttct 24731009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 29835238 - 29835379
Alignment:
Q  32 acctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 131  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  29835238 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagggt 29835337  T
Q  132 atccgaccaaatatttacacacacactattctaattgatgga 173  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29835338 attcgaccaaatatgtacacatacactattcttattgatgga 29835379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 29894576 - 29894717
Alignment:
Q  32 acctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 131  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  29894576 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagggt 29894675  T
Q  132 atccgaccaaatatttacacacacactattctaattgatgga 173  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29894676 attcgaccaaatatgtacacatacactattcttattgatgga 29894717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 29073762 - 29073924
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||||||||  || |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||  ||||||||||||||||||||    
T  29073762 tgagatgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcatta 29073861  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgat 170  Q
    |||||||||||||||||||| ||||| ||||||| |||  ||||| |||||||||| ||||||    
T  29073862 ttaacaaaattgaaagaccaaggtattcgaccaactatgcacacatacactattcttattgat 29073924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 29078526 - 29078688
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||||||||  || |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||  ||||||||||||||||||||    
T  29078526 tgagatgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcatta 29078625  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgat 170  Q
    |||||||||||||||||||| ||||| ||||||| |||  ||||| |||||||||| ||||||    
T  29078626 ttaacaaaattgaaagaccaaggtattcgaccaactatgcacacatacactattcttattgat 29078688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 29106335 - 29106497
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||||||||  || |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||  ||||||||||||||||||||    
T  29106335 tgagatgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcatta 29106434  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgat 170  Q
    |||||||||||||||||||| ||||| ||||||| |||  ||||| |||||||||| ||||||    
T  29106435 ttaacaaaattgaaagaccaaggtattcgaccaactatgcacacatacactattcttattgat 29106497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 29866672 - 29866813
Alignment:
Q  32 acctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 131  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  29866672 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaatttgaaagaccagggt 29866771  T
Q  132 atccgaccaaatatttacacacacactattctaattgatgga 173  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29866772 attcgaccaaatatgtacacatacactattcttattgatgga 29866813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 30061995 - 30061830
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||  ||||||||||||||  ||||||| |||||||||||||  |||||    
T  30061995 tgagatgcatgatagaggtcaaccacctaatataattacttacaattctatattggatgctttatgcaaacgccatcatcttgacaaggcaatcacatta 30061896  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||| ||||||||||||| |||||||| | ||| |||||||||||| ||||||||||||||| ||||    
T  30061895 ttatcaaaattgaaagatcagggtattcaaccgaatatttacacatacactattctaattggtgga 30061830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 24890246 - 24890091
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||| | |||| ||||| ||||| ||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  24890246 tgagatgcatgatagaggtcagccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcatta 24890147  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||||| ||||||||||||||||| |||||| |||| |||||| |||| |||||    
T  24890146 ttaacaaatttgaaagaccagggtattcgaccagatatgtacacatacaccattct 24890091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 29211393 - 29211228
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||| ||||| ||||| ||| |||||||||  ||||||||||||||| |||||   ||||||||||| ||||||||    
T  29211393 tgagatgcatgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaacccatcgggttgacaaggcagttgcatta 29211294  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    |||||||||||||||||||| ||||| |||||||||||  ||||| |||||||||| |||||||||    
T  29211293 ttaacaaaattgaaagaccaaggtattcgaccaaatatgcacacatacactattcttattgatgga 29211228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 24263749 - 24263587
Alignment:
Q  11 gatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattatta 110  Q
    |||| ||||| |||| |||| |||||||||||| ||  ||| |||||||||  |||| ||||||||||||||||   |||||||||||||||||||||||    
T  24263749 gatgcatgatcgagggcaacaacctgatataatcacgtacagttctatattggatgccttatgcaaaaaccatctggttgacaaggcaattgcattatta 24263650  T
Q  111 acaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    | ||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  24263649 ataaaattgaaagaccagggtattcgaccaaatatgtacacatacactattcttattgatgga 24263587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 29905638 - 29905803
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||| | |||||||||||||||| | | |||||||||  ||||||||||||||||| ||||  |||||||||||||  |||||    
T  29905638 tgagatgcatgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacatta 29905737  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||||||||||||||||||| |||||| | ||||||||| |||||| |||| ||||| |||||||||    
T  29905738 ttaacaaaattgaaagacctgggtattcaaccaaatatgtacacatacaccattcttattgatgga 29905803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 30127055 - 30126890
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||||||||||||| | |||||||||||||  ||||||||||||||||||||||  ||||||| |||||||||||     
T  30127055 tgagatgcatgatagaggtcaaccacctgatataattatttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaagcaattgcattg 30126956  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||||| ||||| ||| |||||||||| | ||||| | | |||||| |||||||||| |||||||||    
T  30126955 ttaacgaaatttaaaaaccagggtattcaaccaagtgtgtacacatacactattcttattgatgga 30126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 29882434 - 29882589
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||| |||| |||| |||||||||||||||  |||||||||||||  |||||||||||||||| |||||| ||||||| ||||||||||||    
T  29882434 tgagatgcatgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcatta 29882533  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||||||||||||| ||| ||||| |||||| ||||  ||||| ||||||||||    
T  29882534 ttaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacactattct 29882589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 29909590 - 29909745
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||| |||| |||| |||||||||||||||  |||||||||||||  |||||||||||||||| |||||| ||||||| ||||||||||||    
T  29909590 tgagatgcatgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcatta 29909689  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||||||||||||| ||| ||||| |||||| ||||  ||||| ||||||||||    
T  29909690 ttaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacactattct 29909745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 24886557 - 24886413
Alignment:
Q  16 atgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaa-ggcaattgcattattaacaa 114  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||  |||||||||| |||||||||||| | ||||| ||||||||||||||||||||    
T  24886557 atgatagaggtcagccacctgatataattacttacaattctatattggatgctttatg-aaaaaccatcatgt-gacaaaggcaattgcattattaacaa 24886460  T
Q  115 aattgaaagaccagggtatccgaccaaatatttacacacacactatt 161  Q
    ||||||||||||||||||| |||||| |||| |||||| ||||||||    
T  24886459 aattgaaagaccagggtattcgaccagatatgtacacatacactatt 24886413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 30118741 - 30118576
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||| | |||||||||||||||| | | |||||||||  ||||||||||||||||| ||||  |||||||||||||  |||||    
T  30118741 tgagatgcatgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacatta 30118642  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||||||||||||||||||| ||| || | ||||||||| |||||| |||| ||||| |||||||||    
T  30118641 ttaacaaaattgaaagacctgggaattcaaccaaatatgtacacatacaccattcttattgatgga 30118576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 29903245 - 29903400
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||| |||| |||| |||||||||||||||  |||||||||||||  |||||||||||||||| ||||||  || ||| |||||||| |||    
T  29903245 tgagatgcatgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgctggcaaagcaattgcgtta 29903344  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||||||||||||||||||||||| |||||||||||  ||||| |||| |||||    
T  29903345 ttaacaaaattgaaagaccagggtattcgaccaaatatgaacacatacaccattct 29903400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 29357979 - 29357824
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||| ||||| ||||| ||| |||||||||  ||||||||||||||||||||||  ||||||| |||||||| |||    
T  29357979 tgagatgcatgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaatgcaattgcgtta 29357880  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||| |  ||||| |||||||||| | ||||||||| |||||| ||||||||||    
T  29357879 ttaacacagatgaaaaaccagggtattcaaccaaatatgtacacatacactattct 29357824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 29929274 - 29929433
Alignment:
Q  10 agatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattatt 109  Q
    ||||| |||||||||||  |  |||| ||||| ||||| |||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||    
T  29929274 agatgcatgatagaggtgtagcacctaatatagttacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaagcaattgcattgtt 29929373  T
Q  110 aacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattga 169  Q
    ||| ||||| |||||||||||||| | ||||| | | |||||| |||||||||| |||||    
T  29929374 aacgaaattcaaagaccagggtattcaaccaagtgtgtacacatacactattcttattga 29929433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 29116262 - 29116415
Alignment:
Q  10 agatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattatt 109  Q
    ||||| |||||||||||  || ||||  ||||  |||| |||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||    
T  29116262 agatgcatgatagaggtgtaccacctactatacgtacttacaattctatattagatgctttatgcaaaatccatcaagttgacaaagcaattgcattgtt 29116361  T
Q  110 aacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    ||| |||||||||||| ||||||| | ||||||||| |||||| ||| ||||||    
T  29116362 aacgaaattgaaagacaagggtattcaaccaaatatgtacacatacagtattct 29116415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 29085019 - 29085182
Alignment:
Q  10 agatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattatt 109  Q
    ||||| |||||||||||  || |||| ||||| ||||| ||||||||||| || ||||||||| ||||| ||||||  ||||||| |||||||||||  |    
T  29085019 agatgcatgatagaggtgtaccacctaatatacttacttacaattctataatagatgctttattcaaaacccatcaagttgacaaagcaattgcattgat 29085118  T
Q  110 aacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||| ||||| |||||||||||||| | |||||  || |||||| |||||||||| |||||||||    
T  29085119 aacgaaatttaaagaccagggtattcaaccaagcatgtacacatacactattcttattgatgga 29085182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 29348598 - 29348433
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||||||||  || || ||||| ||||||| |||||||||||||  ||||||||||||||||||||||  |||||||||||||||| ||     
T  29348598 tgagatgcatgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttg 29348499  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||||| ||  |||||||  | || || | |||| |||| |||||| |||||||||| |||||||||    
T  29348498 ttaacgaagatgaaagatgaaggaattcaaccagatatgtacacatacactattcttattgatgga 29348433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 29889731 - 29889894
Alignment:
Q  10 agatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattatt 109  Q
    ||||| |||||||||||  || |||| ||||| | ||| |||||||||||||| ||||||||||||||| ||||||  |||||||  |||||||||| |     
T  29889731 agatgcatgatagaggtgtaccacctaatatagtcacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaaacaattgcattgtc 29889830  T
Q  110 aacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||| ||||| ||||||||| |||| | ||||||| | || ||| |||||||||| |||||||||    
T  29889831 aacgaaatttaaagaccagagtattcaaccaaatgtgtaaacatacactattcttattgatgga 29889894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 29898076 - 29898168
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaat 100  Q
    ||||||| ||||||||||||||| |||| ||||||||||  ||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  29898076 tgagatgcatgatagaggtcaaccacctaatataattacgtacagttctatattgaatgctttatgcaaaaaccatcaggttgacaaggcaat 29898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 29946444 - 29946579
Alignment:
Q  16 atgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 115  Q
    ||||||||||||||| |||| ||||||||||| |||| ||||||||  ||| ||||||||| ||| || || ||||||||||||||| ||| ||||||||    
T  29946444 atgatagaggtcaaccacctaatataattacttacaactctatattggatgttttatgcaagaactatgatgttgacaaggcaattgtatttttaacaaa 29946543  T
Q  116 attgaaagaccagggtatccgaccaaatatttacac 151  Q
    | | |||||||||| ||| | ||||| ||| |||||    
T  29946544 acttaaagaccaggatattcaaccaagtatgtacac 29946579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 29099344 - 29099465
Alignment:
Q  10 agatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattatt 109  Q
    ||||| |||||||||||  || |||| |||||  |||| |||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||    
T  29099344 agatgcatgatagaggtgtaccacctaatatatgtacttacaattctatattagatgctttatgcaaaacccatcaagttgacaaagcaattgcattgtt 29099443  T
Q  110 aacaaaattgaaagaccagggt 131  Q
    ||| ||||| |||||| |||||    
T  29099444 aacgaaatttaaagacaagggt 29099465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 29366421 - 29366317
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||||||||  || || ||||| ||||||| |||||||||||||  ||||||||||||||||||||||  |||||||||||||||| ||     
T  29366421 tgagatgcatgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttg 29366322  T
Q  108 ttaac 112  Q
    |||||    
T  29366321 ttaac 29366317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 29876824 - 29876932
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||||||| |||| |||| ||||||||||| |||||||||||||  |||||||||||||||  |||||| |||| ||| | |||||||||    
T  29876824 tgagatgcatgatagaggccaaccacctaatataattacttacaattctatattgtatgctttatgcaaaattcatcatgttgagaagacgattgcatta 29876923  T
Q  108 ttaacaaaa 116  Q
    |||| ||||    
T  29876924 ttaagaaaa 29876932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 30999938 - 30999838
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||| ||||| ||| | ||| |||||||||  ||||||||||||||||||||| | ||||| ||||||||||||||    
T  30999938 tgagatgcatgatagaggtcaaccacctaatatagttatttacagttctatattggatgctttatgcaaaaaccatcgtgttgaccaggcaattgcatta 30999839  T
Q  108 t 108  Q
    |    
T  30999838 t 30999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 29949856 - 29949732
Alignment:
Q  49 acaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatattta 148  Q
    |||||||| ||||| ||||||||||||||||||||||  |||||||||| ||||||||||||| |||  | |||||||| || || |  |||||||| ||    
T  29949856 acaattctttattagatgctttatgcaaaaaccatcaggttgacaaggcgattgcattattaaaaaagataaaagaccaaggaattcagccaaatatgta 29949757  T
Q  149 cacacacactattctaattgatgga 173  Q
     ||| ||||||| ||  ||||||||    
T  29949756 tacatacactatacttgttgatgga 29949732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 24271947 - 24271853
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattg 102  Q
    ||||||| ||||| |||| |||| |||||||||||| ||  ||| |||||||||  ||| ||||||||||||||||||  |||||||||||||||    
T  24271947 tgagatgcatgatcgagggcaacaacctgatataatcacgtacagttctatattggatgatttatgcaaaaaccatcaggttgacaaggcaattg 24271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 30149526 - 30149648
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| | | || ||||| ||| |||||||| ||||  |||  || ||||||||||||||  |||||| |||||||||||||    
T  30149526 tgagatgcatgatagaggtcaaccaaccgacataatcacttacaattctttatttgatggattgtgcaaaaaccatcaggttgacagggcaattgcatta 30149625  T
Q  108 ttaacaaaattgaaagaccaggg 130  Q
    |||| |||  | |||||||||||    
T  30149626 ttaaaaaagatcaaagaccaggg 30149648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 25451117 - 25451270
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||  ||||| ||||| ||| |||||||||  |||||||||  ||||| |||||  ||||  | ||||||| ||||    
T  25451117 tgagatgcatgatagaggtcaaccaccaaatatatttacttacagttctatattggatgctttattgaaaaaacatcaggttgaagaagcaattgaatta 25451216  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactatt 161  Q
    || | | |||| |||||| ||||||| | ||||||| | |||||| ||||||||    
T  25451217 tttaaagaatttaaagacaagggtattcaaccaaatgtgtacacatacactatt 25451270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 16702123 - 16702057
Alignment:
Q  40 taattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 106  Q
    |||| ||| |||||||  ||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  16702123 taatcacttacaattccttattacatgctttatgtaaaaaccatcatgttgacaaggcaattgcatt 16702057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 24271857 - 24271799
Alignment:
Q  115 aattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    ||||||||||||||||||| ||||||||||| | |||| |||||||||| |||||||||    
T  24271857 aattgaaagaccagggtattcgaccaaatatgttcacatacactattcttattgatgga 24271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 29912051 - 29912126
Alignment:
Q  88 ttgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    ||||||| |||||| ||||||||||||||||||||| ||| ||||| |||||| ||||  ||||| |||| |||||    
T  29912051 ttgacaaagcaattacattattaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacaccattct 29912126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 29914071 - 29914146
Alignment:
Q  88 ttgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    ||||||| ||||||||||| ||||| ||||| |||||||||||||| | ||||| | | |||||| ||||||||||    
T  29914071 ttgacaaagcaattgcattgttaacgaaatttaaagaccagggtattcaaccaagtgtgtacacatacactattct 29914146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 29953653 - 29953542
Alignment:
Q  49 acaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatattta 148  Q
    |||||||| ||||  ||||||| ||||||||||||||  |||||||||| |||||||||||||  ||  |||||||||| || || |  |||||||| ||    
T  29953653 acaattctttattggatgctttgtgcaaaaaccatcaggttgacaaggcgattgcattattaaagaagatgaaagaccaagggattcagccaaatatgta 29953554  T
Q  149 cacacacactat 160  Q
     ||| |||||||    
T  29953553 tacatacactat 29953542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 30053442 - 30053543
Alignment:
Q  24 ggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 123  Q
    ||||||| | || ||||||| ||| |||||||| ||||| |||  || ||||||||||||||  |||||||||||||||| || ||||| ||  ||||||    
T  30053442 ggtcaaccagctaatataatcacttacaattctttattatatggattgtgcaaaaaccatcaggttgacaaggcaattgcgttgttaacgaagatgaaag 30053541  T
Q  124 ac 125  Q
    ||    
T  30053542 ac 30053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 15727133 - 15727090
Alignment:
Q  64 atgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||    
T  15727133 atgctttatgcaaaaaccatcacgttgacaaggcaattgtatta 15727090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 30061705 - 30061644
Alignment:
Q  166 ttgatggagccttggctttgctatcaaaaat---gaaggacaataattgctatccaaatgct 224  Q
    |||||| |||||||||| |||||||||||||   || ||||||||||||| |||||||||||    
T  30061705 ttgatgaagccttggctatgctatcaaaaatgacgacggacaataattgcaatccaaatgct 30061644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 29835504 - 29835561
Alignment:
Q  166 ttgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgc 223  Q
    |||||| ||| ||||||||| | ||||||||||| ||||||| ||||| |||||||||    
T  29835504 ttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgc 29835561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 29866938 - 29866995
Alignment:
Q  166 ttgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgc 223  Q
    |||||| ||| ||||||||| | ||||||||||| ||||||| ||||| |||||||||    
T  29866938 ttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgc 29866995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 29887586 - 29887643
Alignment:
Q  166 ttgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgc 223  Q
    |||||| ||| ||||||||| | ||||||||||| ||||||| ||||| |||||||||    
T  29887586 ttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgc 29887643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 4136 - 4301
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| |||| ||||  |||||||||||||||||||||    |||||||||||||||||||    
T  4136 tgagatgcatgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatccaggtgacaaggcaattgcatta 4235  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 173  Q
    |||||||||||||||||||||||| | | ||||||||| |||||| |||||||||| ||| |||||    
T  4236 ttaacaaaattgaaagaccagggtcttcaaccaaatatgtacacatacactattcttattaatgga 4301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 22342 - 22497
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| || || |||| |||| |||||||||||||||| |||||||||||||  |||||||||||||||| |||||| | ||||| |||||| |||||    
T  22342 tgagatgcattatcgagggcaacaacctgatataattacttacaattctatattggatgctttatgcaaaaaacatcatgtggacaaagcaattacatta 22441  T
Q  108 ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 163  Q
    |||||||||||||||| ||| ||||| |||||| ||||  ||||| |||| |||||    
T  22442 ttaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacaccattct 22497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 24219234 - 24219116
Alignment:
Q  9 gagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattat 108  Q
    |||||| ||||||||||||||| |||| ||||||||||| |||||||| ||||  ||||||||||||||||||||||| ||||||||||||||| ||| |    
T  24219234 gagatgcatgatagaggtcaaccacctaatataattacttacaattctttattggatgctttatgcaaaaaccatcatgttgacaaggcaattgaattgt 24219135  T
Q  109 taacaaaattgaaagacca 127  Q
    |||||||| | ||||||||    
T  24219134 taacaaaacttaaagacca 24219116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 24226818 - 24226911
Alignment:
Q  7 gtgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaat 100  Q
    |||||||| ||||||||||||||| | || | ||||| ||| |||||||| ||||| |||  || ||||||||||||||  |||||||||||||    
T  24226818 gtgagatgcatgatagaggtcaaccagctaacataatcacttacaattctttattagatggattgtgcaaaaaccatcaggttgacaaggcaat 24226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 15062868 - 15062737
Alignment:
Q  16 atgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 115  Q
    ||||||||||||||| | || ||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |||| ||||||||||  |||||||||||    
T  15062868 atgatagaggtcaaccatctaatataattacttacaattctatattagatgctatatgcaaaaacaatcatgttgataaggcaattgtgttattaacaaa 15062769  T
Q  116 attgaaagaccagggtatccgaccaaatattt 147  Q
    | | |||||  ||||||| | |||| ||||||    
T  15062768 aattaaagagaagggtattcaaccagatattt 15062737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 10130134 - 10130246
Alignment:
Q  6 agtgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcat 105  Q
    |||||||||  |||||||||||||| |||| ||||||||||| |||||||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||||    
T  10130134 agtgagatgtctgatagaggtcaacaacctaatataattacttacaattctttattgaatgctttatgccaaaatcaccatgttgacaaagcaatcgcat 10130233  T
Q  106 tattaacaaaatt 118  Q
    | |||| ||||||    
T  10130234 tgttaagaaaatt 10130246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 17251312 - 17251411
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||||||| |||| || |||| ||| ||| |||| |  || ||||||| ||||||| ||||||  |||| |||||||||||||||    
T  17251312 tgagatgcatgatagaggtcaaccacctaatgtaataacttacacttctttgatagatgctttgtgcaaaagccatcaagttgataaggcaattgcatta 17251411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 19490249 - 19490374
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    |||||||  |||||||||||| | ||| ||| |||| ||| | |||||| ||||| |||||||||| ||||  ||||| |  ||||||||||| ||||||    
T  19490249 tgagatgcttgatagaggtcagccacccgatgtaataacttataattctttattagatgctttatgtaaaagtcatcaaaccgacaaggcaatagcatta 19490348  T
Q  108 ttaacaaaattgaaagaccagggtat 133  Q
     |||  ||| ||||||| || |||||    
T  19490349 ctaagcaaaatgaaagatcaaggtat 19490374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 41316274 - 41316358
Alignment:
Q  24 ggtcaactacctgatataattactcacaattctatat-taaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||||||   ||| ||| |||| ||| || ||||||||||||||| | ||||| |||||||||| |||||||||    
T  41316274 ggtcaaccacctgatatatccacttacagttctttatatagatgctttatgcaaaagcaatcatcttgacaaggctattgcatta 41316358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 53596 - 53532
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttat 72  Q
    ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  53596 tgagatgcatgatagaggtcaaccacctaatataattacttacaattctatattaaatgctttat 53532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 3232 - 3331
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    |||||||  |||||| ||||||| | |||||||||| ||| |||||||  || || ||||||||||||||||||||||| |||||||||| |||||||||    
T  3232 tgagatgcgtgatagtggtcaaccagctgatataatcacttacaattcattaatagatgctttatgcaaaaaccatcatgttgacaaggctattgcatta 3331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 3643096 - 3643201
Alignment:
Q  68 tttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaat 166  Q
    ||||||||||||||||||||||||||| || ||||||||| |||| |||||| ||||||||||| || | ||||| ||| |||||| ||| ||| || ||    
T  3643096 tttatgcaaaaaccatcatattgacaaagctattgcattagttaagaaaatt-aaagaccagggcattcaaccaagtatgtacacatacaatatacttat 3643194  T
Q  167 tgatgga 173  Q
    |||||||    
T  3643195 tgatgga 3643201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 137389 - 137537
Alignment:
Q  24 ggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaa 122  Q
    ||||||| |||||| ||| ||||  ||| |||| || || ||||||||||||||||| ||||| ||||||| || ||||||||| | || |||||| |||    
T  137389 ggtcaaccacctgacatatttacctacagttctttaatagatgctttatgcaaaaacaatcatcttgacaaagctattgcattagtcaagaaaatt-aaa 137487  T
Q  123 gaccagggtatccgaccaaatatttacacacacactattctaattgatgg 172  Q
    ||||| || || | ||||||||| |||||| ||| ||| || ||||||||    
T  137488 gaccaaggcattcaaccaaatatgtacacatacaatatacttattgatgg 137537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 121424 - 121382
Alignment:
Q  64 atgctttatgcaaaaaccatcatattgacaaggcaattgcatt 106  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  121424 atgctttatgcaaaaatcatcaagttgacaaggcaattgcatt 121382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 126067 - 126024
Alignment:
Q  64 atgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  126067 atgctttatgcaaaaaccatcagattgacaaggctattgcatta 126024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 6211 - 6294
Alignment:
Q  24 ggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| |||||| |||   ||| |||||||| || || |||| |||||||||||||||||| |||||||||| |||| ||||    
T  6211 ggtcaaccacctgacatatgcacttacaattctttaatagatgcattatgcaaaaaccatcatgttgacaaggctattgtatta 6294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 47903 - 47804
Alignment:
Q  8 tgagatgaatgatagaggtcaactacctgatataattactcacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 107  Q
    ||||||| ||||||  || |||| |||  ||||| | ||| |||||||| || ||||| |||||||||||||| ||||  |||||||||| |||||||||    
T  47903 tgagatgcatgataatggccaaccacccaatatattcacttacaattctttaataaattctttatgcaaaaactatcaggttgacaaggctattgcatta 47804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 9782594 - 9782655
Alignment:
Q  64 atgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagac 125  Q
    ||||||| ||||||| ||||||  |||||||||||||||| || ||||||||  ||||||||    
T  9782594 atgctttgtgcaaaatccatcaggttgacaaggcaattgcgttgttaacaaagatgaaagac 9782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 1162 - 1122
Alignment:
Q  66 gctttatgcaaaaaccatcatattgacaaggcaattgcatt 106  Q
    |||||||| |||||||||||  |||||||||||||||||||    
T  1162 gctttatgtaaaaaccatcaagttgacaaggcaattgcatt 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 31264 - 31220
Alignment:
Q  58 tattaaatgctttatgcaaaaaccatcatattgacaaggcaattg 102  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||    
T  31264 tattacatgctttatgtaaaaaccatcatgttgacaaggccattg 31220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 44262537 - 44262489
Alignment:
Q  64 atgctttatgcaaaaaccatcatattgacaaggcaattgcattattaac 112  Q
    ||||||| ||||||||||||||  |||||||||||||  ||||||||||    
T  44262537 atgctttgtgcaaaaaccatcaggttgacaaggcaatcacattattaac 44262489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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