View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6149_high_2 (Length: 640)
Name: NF6149_high_2
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 18 - 630
Target Start/End: Complemental strand, 4619182 - 4618570
Alignment:
| Q |
18 |
cttctagccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4619182 |
cttctagccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccacca |
4619083 |
T |
|
| Q |
118 |
agcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4619082 |
agcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaacagtggctgttggagtcattaaggctgt |
4618983 |
T |
|
| Q |
218 |
gaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618982 |
gaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtc |
4618883 |
T |
|
| Q |
318 |
gttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618882 |
gttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatca |
4618783 |
T |
|
| Q |
418 |
gtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgttttatgctttaattattgtgtctaatgtgaacacttggattt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618782 |
gtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgttttatgctttaattattgtgtctaatgtgaacacttggattt |
4618683 |
T |
|
| Q |
518 |
tgttgacatcaagtttctgaacatgctgagcttgattttgttttgaatatcaattctttatttgtgtatttacttcttggtgtaatgttttatgttcttg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618682 |
tgttgacatcaagtttctgaacatgctgagcctgattttgttttgaatatcaactctttatttgtgtatttacttcttggtgtaatgttttatgttcttg |
4618583 |
T |
|
| Q |
618 |
ccgggtgtctctg |
630 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4618582 |
ccgggtgtctctg |
4618570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 4788300 - 4788431
Alignment:
| Q |
71 |
attcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgct |
170 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||| ||||| ||||||||||||| |||||||||||| |||| | | |||||| |||| |||| ||||| | |
|
|
| T |
4788300 |
attcttgaagaatggtgatgatggtcttattgagatggttcccaccaagcctatggtggtagagcctttctatctatatcctccacttggccattttgtt |
4788399 |
T |
|
| Q |
171 |
gtcagagacatacgtcgaactgtggctgttgg |
202 |
Q |
| |
|
||| || || | | || ||||||||||||||| |
|
|
| T |
4788400 |
gtccgatacttgcatcaaactgtggctgttgg |
4788431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 4296854 - 4296749
Alignment:
| Q |
97 |
ttattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggc |
196 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||| |||| ||| | |||| ||||| ||||||||| |||| |||| | | || || |||||| |
|
|
| T |
4296854 |
ttattaagatgattcccaccgagtctatggtggtagagcctttctctctatctcctccactcagccgttttgttgtccaagacttgcatcaaattgtggc |
4296755 |
T |
|
| Q |
197 |
tgttgg |
202 |
Q |
| |
|
|||||| |
|
|
| T |
4296754 |
tgttgg |
4296749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 5e-76; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 25 - 589
Target Start/End: Original strand, 45984487 - 45985043
Alignment:
| Q |
25 |
ccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccat |
124 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||| ||||||||||| ||| || ||||||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
45984487 |
ccaaggttgacaggtgttctggtgaggaaattgagagggagcccaaatttttgatgagtggtgatactggtattattaagatgattcccaccaagcctat |
45984586 |
T |
|
| Q |
125 |
ggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaag |
224 |
Q |
| |
|
|||||||||| |||| ||| |||||| ||||||||||||||| |||||||||| | || ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45984587 |
ggtggtagagcctttctctctatatcctccactcggccgttttgttgtcagagactggcatcaaactgtggctgttggagtcatcaaggctgtgaagaag |
45984686 |
T |
|
| Q |
225 |
aaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttatta |
324 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||| | || |||| |||||| ||||||||| | | |||| | ||||| ||||||| |
|
|
| T |
45984687 |
aaggatcctgctgcaggaggtaaaatcactaagtcgatattgaaaaaatgaactgtgcaagatgatcta----tctagcgaaa-tctatcgttgttatta |
45984781 |
T |
|
| Q |
325 |
caataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatat--cagttt- |
421 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||| |||||||||| | |||| |||||| |
|
|
| T |
45984782 |
c---cataaatagtctttggtccttagtatttctatttctcctctagtaaacttgttttgcagattaagtgtgaagtctgcaccattatatcacagtttt |
45984878 |
T |
|
| Q |
422 |
---ttgttcctagaactcggttctagattgactgtggcagggctatttcttt--ttcgttttatgctttaattattgtgtctaatgtgaacacttggatt |
516 |
Q |
| |
|
|| |||| |||| | |||||||||| | |||| | ||||||| ||| ||||||||||| | |||||| ||||||| |||||||||||||||| |
|
|
| T |
45984879 |
ttcttcttcccagaattgggttctagataaatggtggaatagctatttattttgttcgttttatgttctaatta--gtgtctagtgtgaacacttggatt |
45984976 |
T |
|
| Q |
517 |
ttgttgacatcaagtttctgaacatgctgagcttgattttgttttgaatatcaattctttatttgtgtattta |
589 |
Q |
| |
|
||| | || | |||||||| || ||| ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
45984977 |
ttgctagcagcgagtttctggacctgc------tgattttgttttgaatatcaactctttatttgtgtgttta |
45985043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 27 - 520
Target Start/End: Complemental strand, 43044484 - 43043990
Alignment:
| Q |
27 |
aagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatgg |
126 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43044484 |
aagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaagcccatgg |
43044385 |
T |
|
| Q |
127 |
tggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
|||| |||||||| ||| | |||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
43044384 |
tggttgagactttctctgaatatcctccactcggccgttttgctgttagagacatgcgtcaaactgtggctgttggggtcatcaaggctgtggagaagaa |
43044285 |
T |
|
| Q |
227 |
ggatcctggtgcaggaggtagtatcactaaatcggcatt---gcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttatt |
323 |
Q |
| |
|
|||||| ||| |||| || || || || ||||| | ||||||||| | |||||||||||| ||||| | | ||| ||| | |||||| |
|
|
| T |
43044284 |
ggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaaccgagcaggatgatct--atttacttgggaagcatatcatagttatt |
43044187 |
T |
|
| Q |
324 |
acaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agttt |
421 |
Q |
| |
|
|| ||||| | |||||||||||| ||||||||||| || |||||| ||||||||| || ||||||||||||||||||| |||| || || || |
|
|
| T |
43044186 |
ac---aataaatggtctttggtccttagtatttctatttctcttctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagctt |
43044090 |
T |
|
| Q |
422 |
ttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaattattgtgtctaatgtgaacacttggattttgt |
520 |
Q |
| |
|
||||| |||||| |||||||||| ||| ||||||| |||| ||| |||| ||||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
43044089 |
gtgttctcagaactgggttctagatcgacggtggcagtactatatctgttttgtttttatgctttaattgttgtgtctagtctgaacacttggattttgt |
43043990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 38138654 - 38138921
Alignment:
| Q |
25 |
ccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccat |
124 |
Q |
| |
|
||||| ||||||||| ||||||| || ||| ||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
38138654 |
ccaagtttgacaggttttctggtttggaaatcgagaaggagcccaaattcttgaagaatggtgatgctggtgttgttaagatgattcccaccaagtccat |
38138753 |
T |
|
| Q |
125 |
ggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaag |
224 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| | || |||||||||| |
|
|
| T |
38138754 |
ggtggtagaggatttttctacttatcctccacttggccgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcatcatggttgtgaagaag |
38138853 |
T |
|
| Q |
225 |
aaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatct |
292 |
Q |
| |
|
||||||||| ||||| ||||| ||| |||| | ||||||| |||||||||| ||||||||||||| |
|
|
| T |
38138854 |
aaggatcctcatgcagaaggtaagatcgctaagtaggcattgaagaagtgaatcttgcaggatgatct |
38138921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 27 - 520
Target Start/End: Original strand, 43067507 - 43068000
Alignment:
| Q |
27 |
aagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatgg |
126 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43067507 |
aagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaagcccatgg |
43067606 |
T |
|
| Q |
127 |
tggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
|||| |||||||| ||| | |||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||| ||||||| |
|
|
| T |
43067607 |
tggttgagactttctctgaatatcctccactcggccgttttgctgttagagacatgcgtcaaactgtggctgttggcgtcatcaaagctgtggagaagaa |
43067706 |
T |
|
| Q |
227 |
ggatcctggtgcaggaggtagtatcactaaatcggcatt---gcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttatt |
323 |
Q |
| |
|
|||||| ||| |||| || || || || ||||| | ||||||||| | |||||||||||| || || | | ||| ||| | |||||| |
|
|
| T |
43067707 |
ggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaaccgagcaggatgatct--atctacttgggaagcatatcatagttatt |
43067804 |
T |
|
| Q |
324 |
acaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agttt |
421 |
Q |
| |
|
|| ||||| | |||||||||||| ||||||||||| || ||||||| ||||||||| || ||||||||||||||||||| |||| || || || |
|
|
| T |
43067805 |
ac---aataaatggtctttggtccttagtatttctatttctagtctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagctt |
43067901 |
T |
|
| Q |
422 |
ttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaattattgtgtctaatgtgaacacttggattttgt |
520 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||||||| ||| | ||| |||| ||||||||||||||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
43067902 |
ttgttctcagaactgggttctagatcgacggtggcagcgctctatctgttttatttttatgctttaattgttgtgtctagtctgaa-acttggattttgt |
43068000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 27 - 520
Target Start/End: Complemental strand, 43083328 - 43082835
Alignment:
| Q |
27 |
aagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatgg |
126 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43083328 |
aagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaagcccatgg |
43083229 |
T |
|
| Q |
127 |
tggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
|||| |||||||| ||| | |||||| ||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||| ||||||| |
|
|
| T |
43083228 |
tggttgagactttctctgaatatcctccactcggtcgttttgctgttagagacatgcgtcaaactgtggctgttggcgtcatcaaagctgtggagaagaa |
43083129 |
T |
|
| Q |
227 |
ggatcctggtgcaggaggtagtatcactaaatcggcatt---gcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttatt |
323 |
Q |
| |
|
|||||| ||| |||| || || || || ||||| | ||||||||| || |||||||| ||| || || | | ||| ||| | |||||| |
|
|
| T |
43083128 |
ggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaactgagcaggatggtct--atctacttgggaagcatatcatagttatt |
43083031 |
T |
|
| Q |
324 |
acaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agttt |
421 |
Q |
| |
|
|| ||||| | ||||| |||||| ||||||||||| || ||||||| ||||||||| || ||||||||||||||||||| |||| || || || |
|
|
| T |
43083030 |
ac---aataaatggtcttgggtccttagtatttctatttctcgtctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagctt |
43082934 |
T |
|
| Q |
422 |
ttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaattattgtgtctaatgtgaacacttggattttgt |
520 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||||||| ||| | ||| |||| ||||||||||||||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
43082933 |
ttgttctcagaactgggttctagatcgacggtggcagcgctctatctgttttgtttttatgctttaattgttgtgtctagtctgaa-acttggattttgt |
43082835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 7891776 - 7891955
Alignment:
| Q |
55 |
ttgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttc |
154 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
7891776 |
ttgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaagcccatggtggtagagacttttactgcatatccttc |
7891875 |
T |
|
| Q |
155 |
actcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctg |
234 |
Q |
| |
|
||| || |||||||||||||||||||| |||| |||||||||| |||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
7891876 |
acttggtcgttttgctgtcagagacatgcgtcaaactgtggctattggagtcatcaaggatgtgaagaataaggatcctg |
7891955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 3300218 - 3300013
Alignment:
| Q |
27 |
aagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatgg |
126 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3300218 |
aagattgacaggcgttctggaaaggagattgagaaggagcccaaattcttgaagaacggtgatgctggtattattaagatgattcccaccaagcccatgg |
3300119 |
T |
|
| Q |
127 |
tggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
|||| |||||||| ||| | |||||| |||| |||||||| |||||||| || || |||| |||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
3300118 |
tggttgagactttctctgagtatcctccacttggccgtttcgctgtcagggatatgcgtcagactgtggctgttggtgtcatcaaggctgtggagaagaa |
3300019 |
T |
|
| Q |
227 |
ggatcc |
232 |
Q |
| |
|
|||||| |
|
|
| T |
3300018 |
ggatcc |
3300013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 50911899 - 50911744
Alignment:
| Q |
53 |
aattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatcct |
152 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| || | |||| |
|
|
| T |
50911899 |
aattgagaaggagcccaaattcttgaagaatggtgacgctggtgttattgagatgattcccaccaagcccatgttggtagagactttttccaaatttcct |
50911800 |
T |
|
| Q |
153 |
tcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
50911799 |
tcactcggccgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcat |
50911744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 43077382 - 43077589
Alignment:
| Q |
25 |
ccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccat |
124 |
Q |
| |
|
|||||||||| ||| ||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43077382 |
ccaagattgataggcgttctggtatggtgattgagacgaagcccaaattcctgatgaatggtgatgctggtattattaagatgattcccaccaagcccat |
43077481 |
T |
|
| Q |
125 |
ggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaag |
224 |
Q |
| |
|
|||||| |||||||| ||| | |||||| |||| ||||||||| || |||| |||| |||| ||||||||||||||| ||||| | ||||||| || || |
|
|
| T |
43077482 |
ggtggttgagactttctctgaatatcctccacttggccgttttactatcagggacaagcgtcaaactgtggctgttggtgtcatcacggctgtggagtag |
43077581 |
T |
|
| Q |
225 |
aaggatcc |
232 |
Q |
| |
|
|||||||| |
|
|
| T |
43077582 |
aaggatcc |
43077589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 366 - 520
Target Start/End: Original strand, 7892138 - 7892295
Alignment:
| Q |
366 |
gtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggcta |
463 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||| ||||| | ||| |||||||||||||||| | |||||||| | | |||||||| | | |
|
|
| T |
7892138 |
gtctagtaaacttgctttgtaggttaagtgtgatgtctgcaccgtcatctagcagcttttgttcctagaactggcttctagatcggcggtggcaggtcca |
7892237 |
T |
|
| Q |
464 |
tttctttttcgtttt-atgctttaattattgtgtctaatgtgaacacttggattttgt |
520 |
Q |
| |
|
||||||||| ||||| ||||| | ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
7892238 |
tttcttttttgtttttatgctatgattattgtgtctagtgtgaatacttggattttgt |
7892295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 40035528 - 40035691
Alignment:
| Q |
63 |
gagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggcc |
162 |
Q |
| |
|
|||||||||||| || |||||||||||| || || || | |||||||| ||||||||||||||||||||| || | | || ||| ||||||| | || |
|
|
| T |
40035528 |
gagcccaaattcttggagaatggtgatggggggcttgttgaaatgattccaaccaagcccatggtggtagagcctaatgcaaaatattcttcacttgccc |
40035627 |
T |
|
| Q |
163 |
gttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
||||| | |||||||||| ||||||||||| |||||||||||||| |||| ||||| |||||| |
|
|
| T |
40035628 |
gttttacagtcagagacacgcgtcgaactgtcgctgttggagtcatcaaggatgtgacgaagaa |
40035691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 485
Target Start/End: Complemental strand, 3299875 - 3299761
Alignment:
| Q |
374 |
aacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttt |
471 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||| ||||| || | ||||||||| | |||| |||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
3299875 |
aacttgtttttcggattaagtgtcaagtctgcaccgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttctttt |
3299776 |
T |
|
| Q |
472 |
tcgt-tttatgcttt |
485 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
3299775 |
ccgtgtttatgcttt |
3299761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 512
Target Start/End: Original strand, 38139003 - 38139132
Alignment:
| Q |
385 |
caggttaagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcg-ttttatg |
481 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||| ||||||||| |||||| | ||||||||||| |||||| ||| ||||||||||| ||||||| |
|
|
| T |
38139003 |
caggttaagtgtcaagtctgcaccgtcatctcacagcttttgttccaagaactggcttctagattgatggtggca-ggccgtttctttttcgtttttatg |
38139101 |
T |
|
| Q |
482 |
ctttaattattgtgtctaatgtgaacacttg |
512 |
Q |
| |
|
|| | |||| ||||||| |||||| ||||| |
|
|
| T |
38139102 |
ctatgattactgtgtcttgtgtgaatacttg |
38139132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 7e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 4230949 - 4230741
Alignment:
| Q |
27 |
aagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccatgg |
126 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4230949 |
aagattgacaggcgttctggtaaggagatcgagaaggagcctaaattcctgaagaatggagatgctggtattattaagatgattcccaccaagcccatgg |
4230850 |
T |
|
| Q |
127 |
tggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
|||| |||||||| ||| | |||||| |||| |||||||||||||||||||| || || | ||||||||||||||| || || |||| |||| ||||||| |
|
|
| T |
4230849 |
tggttgagactttctctgaatatcctccacttggccgttttgctgtcagagatatgcggcaaactgtggctgttggggttatcaagggtgtggagaagaa |
4230750 |
T |
|
| Q |
227 |
ggatcctgg |
235 |
Q |
| |
|
||| ||||| |
|
|
| T |
4230749 |
ggaacctgg |
4230741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 19965396 - 19965504
Alignment:
| Q |
100 |
ttaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgt |
199 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||| ||| | |||||| |||||||| |||||| || |||||||| |||| |||||||||| | |
|
|
| T |
19965396 |
ttaagatgattcccgccaagcctatggtggtagaggctttctctcaatatcctccactcggctgttttgttgctagagacatgcgtcaaactgtggcttt |
19965495 |
T |
|
| Q |
200 |
tggagtcat |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
19965496 |
tggagtcat |
19965504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 7530053 - 7530261
Alignment:
| Q |
25 |
ccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccat |
124 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||| |||||||| ||| ||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
7530053 |
ccaagattgacaggcgatctggtaaggagattgagaaggagcccaagttcttgaagaatggtgatgctggtatcattaagatggttcccaccaagcccat |
7530152 |
T |
|
| Q |
125 |
ggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaag |
224 |
Q |
| |
|
|||||| ||||| ||| || | |||||| | || || |||||||||||||| ||||| |||| |||||| |||||||| ||||| ||||||||| ||||| |
|
|
| T |
7530153 |
ggtggttgagacctttgctgaatatcctcctcttggacgttttgctgtcagggacatgcgtcaaactgttgctgttggtgtcatcaaggctgtggagaag |
7530252 |
T |
|
| Q |
225 |
aaggatcct |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
7530253 |
aaggatcct |
7530261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 7520516 - 7520723
Alignment:
| Q |
25 |
ccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccat |
124 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||| |||||||| ||| ||||||| ||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
7520516 |
ccaagattgacaggcgatctggtaaggagattgagaaggagcccaagttcttgaagaacggtgatgctggtatcattaagatggttcccaccaagcccat |
7520615 |
T |
|
| Q |
125 |
ggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaag |
224 |
Q |
| |
|
|||||| ||||| || || | |||||| | || || |||||||| ||||| ||||| |||| |||||| |||||||| ||||| ||||||||| ||||| |
|
|
| T |
7520616 |
ggtggttgagaccttcgctgaatatcctcctcttggacgttttgccgtcagggacatgcgtcaaactgttgctgttggtgtcatcaaggctgtggagaag |
7520715 |
T |
|
| Q |
225 |
aaggatcc |
232 |
Q |
| |
|
|||||||| |
|
|
| T |
7520716 |
aaggatcc |
7520723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 16348640 - 16348412
Alignment:
| Q |
18 |
cttctagccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccacca |
117 |
Q |
| |
|
||||| |||||| | ||||||| |||||| ||| |||||| ||| |||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
16348640 |
cttcttgccaaggtagacaggttttctggcaagataattgtgaaggagcccaaattcttgaagaaaggtgatggtggcattattcagatgattcccacca |
16348541 |
T |
|
| Q |
118 |
agcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| | | || |||||||||| ||||| |||| || ||| |
|
|
| T |
16348540 |
agcccatggtggtagagactttttctgaatatccttcactcggccgttttattgtcagagatacgcatcaaactgtggctattggaatcatcttggttgt |
16348441 |
T |
|
| Q |
218 |
gaagaagaaggatcctggtgcaggaggta |
246 |
Q |
| |
|
||| |||||||||||| ||| | |||||| |
|
|
| T |
16348440 |
gaacaagaaggatcctagtgaaagaggta |
16348412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 33860321 - 33860137
Alignment:
| Q |
24 |
gccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagccca |
123 |
Q |
| |
|
|||||| ||||| ||| || |||||||| ||||||||| ||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
33860321 |
gccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgatgctgctgctattaagatgattcccaccaagccta |
33860222 |
T |
|
| Q |
124 |
tggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat |
208 |
Q |
| |
|
||||||||||| ||| || |||||||| ||||||||||||||| || ||||||| |||| |||||||||| |||| ||||| |
|
|
| T |
33860221 |
tggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaggcgtcaaactgtggcttttggcgtcat |
33860137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 16231616 - 16231466
Alignment:
| Q |
76 |
tgaagaatggtgatgctggcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcag |
175 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||| | ||||| |||||||| ||| | | | | |||||||| || || |||||||||||||| |
|
|
| T |
16231616 |
tgaagaatggtgatgcaggaattgttaagatgattcctatgaagcctatggtggtggagggtatcaatgaatatccttcccttggtcgttttgctgtcag |
16231517 |
T |
|
| Q |
176 |
agacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa |
226 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
16231516 |
agacatgcgtcaaactgtggctgttggagtcataatgtctgtaaagaagaa |
16231466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 34690192 - 34690143
Alignment:
| Q |
159 |
ggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat |
208 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
34690192 |
ggccgttttgctgtcagagacatgcgtcaaactgtggctgttggaatcat |
34690143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 34712604 - 34712555
Alignment:
| Q |
159 |
ggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat |
208 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
34712604 |
ggccgttttgctgtcagagacatgcgtcaaactgtggctgttggaatcat |
34712555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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