View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_high_6 (Length: 468)
Name: NF6149_high_6
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 4041908 - 4042341
Alignment:
| Q |
15 |
cagagaaatgagagtagggtagtggttgatgtaataatccattaattatcaactttgacaacgaatataacttaataatttgtgaaaaccttaattggtg |
114 |
Q |
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| T |
4041908 |
cagagaaatgagagtagggtagtggttgatgtaataatccattaattatcaactttgacaacgaatataacttaataatttgtgaaaaccttaattggtg |
4042007 |
T |
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| Q |
115 |
aaagatgctgactagattgcgatatttttatgagatgaatagtcacaaattattggcccttcaagatcaacatttatgacaacgtaagttgacactacct |
214 |
Q |
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| T |
4042008 |
aaagatgctgactagattgcgatatttttatgagataaatagtcacaaattattggcccttcaagatcaacatttatgacaacgtaagttgacactacct |
4042107 |
T |
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| Q |
215 |
agctatcgtgatttggttggcctaatgtcaacatacatctttctttcacaaattgtgctactattattattattaatgtttgaatcgtttccattttgtc |
314 |
Q |
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| T |
4042108 |
agctatcgtgatttggttggcctaatgtcaacatacatctttctttcacaaattgtgctac---tattattattaatgtttgaatcgtttccattttgtc |
4042204 |
T |
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| Q |
315 |
tctcctatccttctttatctccccctctcattatgataggacgaatactagttagtactagtaatagtagatacatacattaatatagaagtcatacatg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||||| |
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| T |
4042205 |
tctcctatccttctttatctccccctctcattatgataggacgaatactagttagtactagtagtagtagatacatacattaatatagtattcctacatg |
4042304 |
T |
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| Q |
415 |
aacttgtaataaatgtggagaaaaaggaatggaagta |
451 |
Q |
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| T |
4042305 |
aacttgtaataaatgtggagacaaaggaatggaagta |
4042341 |
T |
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