View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_high_8 (Length: 452)
Name: NF6149_high_8
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 436
Target Start/End: Original strand, 44729374 - 44729803
Alignment:
| Q |
9 |
cacagattctaacacatcaacgtgtcgcatgagtattggtgattttgtttcatgattccttccgatcttaacacttccaaccaatctatgaatgttgtta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44729374 |
cacagattctaacacatcaacgtgtcgcatgagtattggtgattttgtttcatgattccttccgatcttaactcttccaaccaatctatgaatgttgtta |
44729473 |
T |
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| Q |
109 |
caatctgctccacgtgctttacctccctgcctctgcattcctccattgttaaaatatctgccatcaagtagccaagggttaacatttgtgtccttatttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44729474 |
caatctgctccacgtgctttacctccctgcctctgcattcatccattgttaaaatatctgccatcaagtagccaagggttaacatttgtgtccttatttc |
44729573 |
T |
|
| Q |
209 |
aacccctgaattctgctcttaaatatggaccccacagcttttctccctccacata---accttcatagcgcttctaacaatagccatcacatcagtatgc |
305 |
Q |
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| T |
44729574 |
aacccctgaattctgctcttaaatatggaccccacagcttttctccctccacataaccaccttcatagcgcttctaacaatagccatcacatcagtatgc |
44729673 |
T |
|
| Q |
306 |
cttctaatatcacaactaaacttccttcaatgacactagtattaatttggattatatttttcgcccctgaactcttgaacattttaagaatctcttaaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44729674 |
cttctaatatcacaactaaacttccttcaatgacactagtattaatttggattata-ttttcacccctgaactcttgaacattttaagaatctcttaaat |
44729772 |
T |
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| Q |
406 |
gcaaaaaactcttgcatttttatccattact |
436 |
Q |
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| T |
44729773 |
gcaaaaaactcttgcatttttatccattact |
44729803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 44951052 - 44950963
Alignment:
| Q |
348 |
taatttggattatatttttcgcccctgaactcttgaacattttaagaatctcttaaatgcaa-aaaactcttgcatttttatccattact |
436 |
Q |
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| T |
44951052 |
taatttggattatatttttcacccttgaacgcttgaacattttaagaatctcttaaatgcaaaaaaactcttgcatttttatccattact |
44950963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 17059856 - 17059902
Alignment:
| Q |
384 |
acattttaagaatctcttaaatgcaaaaaactcttgcatttttatcc |
430 |
Q |
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| T |
17059856 |
acattttatgaatctcttaaatgcaaaaagctcttgcatttttatcc |
17059902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 44624333 - 44624386
Alignment:
| Q |
379 |
cttgaacattttaagaatctcttaaatgcaaaaaactcttgcatttttatccat |
432 |
Q |
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| T |
44624333 |
cttgaacatttttagaatctcttaagtgaaaaaaactcttgtatttttatccat |
44624386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 39397558 - 39397506
Alignment:
| Q |
376 |
actcttgaacattttaagaatctcttaaatgcaaaaaactcttgcatttttat |
428 |
Q |
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|||||||||| || || |||||||||| ||||||||||||||||| ||||||| |
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| T |
39397558 |
actcttgaaccttctatgaatctcttatatgcaaaaaactcttgcgtttttat |
39397506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 39478855 - 39478821
Alignment:
| Q |
379 |
cttgaacattttaagaatctcttaaatgcaaaaaa |
413 |
Q |
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| T |
39478855 |
cttgaacattttatgaatctcttaaatgcaaaaaa |
39478821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 16113571 - 16113624
Alignment:
| Q |
379 |
cttgaacattttaagaatctcttaaatgcaaaaaactcttgcatttttatccat |
432 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
16113571 |
cttgtacattttataaatctcttaaatgcaaaaaactcttgtgtttttatccat |
16113624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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