View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_high_9 (Length: 445)
Name: NF6149_high_9
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 4390543 - 4390959
Alignment:
| Q |
18 |
agctccagctttcattggatgcaacaaaggttggcaannnnnnnaatttataacttcaagaactgcatgtgccaccaattgctttacttagcaatgctga |
117 |
Q |
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| T |
4390543 |
agctccagctttcattggatgcaacaaaggttggcaatttttttaatttataacttcaagaactgcatgtgccaccaattgctttacttagcaatgcaga |
4390642 |
T |
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| Q |
118 |
aattcctccaataccaaattgggaacgttgtagcttttcctcgttcctaacattggcttagatagaatcttgcagtgnnnnnnnnnnncattggctatag |
217 |
Q |
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| T |
4390643 |
aattcctccaataccaaattgggaacgttgtagcttttcctcgttcctaacattggtttagatagaatcttgcagtgaaaaaaaaaa-cattggctatag |
4390741 |
T |
|
| Q |
218 |
aatcttttgtatcttcccgaatggtctattgttgaattacttaaaggaggttaattggtcaaatgaaactcatagatttgaggatctttttgttgggaag |
317 |
Q |
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| T |
4390742 |
aatcttttgtatcttcccgaatggtctattgttgaattacttaagggaggttaattggtcaaatgaaactcatagatttgaggatctttttgttgggaag |
4390841 |
T |
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| Q |
318 |
ttcgggagtagcaatgggctaaatgttcaggatcctaagagacttgaactttttgttgtagttgtgttatgtcaagagactagggtcgaagctgtttaag |
417 |
Q |
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| T |
4390842 |
ttcggtagcagcaatgggctaaatgttcaggatcctaagagacttgaactttttgttgtagttctgttatgtcaagagactagggtcgaagttgtttaag |
4390941 |
T |
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| Q |
418 |
gtctcccttagccctttg |
435 |
Q |
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| T |
4390942 |
gtctcccttaaccctttg |
4390959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 38709316 - 38709353
Alignment:
| Q |
378 |
gttgtgttatgtcaagagactagggtcgaagctgttta |
415 |
Q |
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| T |
38709316 |
gttgtgttatgtcaagggactagggtcgaggctgttta |
38709353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 425
Target Start/End: Complemental strand, 26501058 - 26501011
Alignment:
| Q |
378 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctccct |
425 |
Q |
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| T |
26501058 |
gttgtgttctgtcaaaggactagggtcgaagttgtttaaggtctccct |
26501011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 29685205 - 29685261
Alignment:
| Q |
378 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctcccttagccctttg |
435 |
Q |
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| T |
29685205 |
gttgtgttctgtcaaggaactagggtcgaagctgttt-agatctcccttagccatttg |
29685261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 29685069 - 29685120
Alignment:
| Q |
378 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctcccttagcc |
430 |
Q |
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| T |
29685069 |
gttgtgttatgtcaagggactagggtcaaggctgttt-agttctcccttagcc |
29685120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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