View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_low_10 (Length: 382)
Name: NF6149_low_10
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 188 - 367
Target Start/End: Original strand, 52722159 - 52722338
Alignment:
| Q |
188 |
taatataaaccgtgaaagacatataaaatagttttgattggtgtcaactgaacatatataattctattcatcttttgttgatgggtaatgtagttaccgc |
287 |
Q |
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| T |
52722159 |
taatataaaccgtaaaagacaaatgaaatagttttgattggtgtcaactgaatatatataattctattcatcttttgttgatgggtaatgtagttaccgc |
52722258 |
T |
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| Q |
288 |
aaataaagaatacgtgggttctttctacattaattaattgtaagattaattaacatgcatggataatggattggtctctg |
367 |
Q |
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| T |
52722259 |
aaataaagaatacgtgggttctttctacattaattaattgtaagattaattaacatgcatggataatggattggtctctg |
52722338 |
T |
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Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 52720415 - 52720596
Alignment:
| Q |
19 |
ccttataatttaatcaagatgatatgaggatcaacaagcaccg----tataggattaatttaaaaaggaaagcaaattattacctacccatcaacaaaag |
114 |
Q |
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| T |
52720415 |
ccttataatttaatcaagatgatatgaggatcaacaagcaccgcgcgtataggattaatttaaaaaggaaagcaaattattacctacccatcaacgaaag |
52720514 |
T |
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| Q |
115 |
gtggatagagttacccatattgagttcgtatcgatcaaaattattcatatgcccactatataaactatatctataatataaa |
196 |
Q |
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| T |
52720515 |
gtggatagagttacccatattgagttcgcatcaatcaaaatcattcatatgcccgctatataaactatatatataatataaa |
52720596 |
T |
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