View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_low_13 (Length: 354)
Name: NF6149_low_13
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 52768607 - 52768941
Alignment:
| Q |
1 |
gaaaaatcaattcgacaagggagaaattggctttcgtacttctaaataagagctatatgcagttaaatgggatacgatgtcaaagatattttaatgaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52768607 |
gaaaaatcaattcgacaagggagaaattggctttcgtacttctaaataagagctatatgcagttaaatgggatacaatgtcaaagatattttaatgaaaa |
52768706 |
T |
|
| Q |
101 |
tggatgaaagagaaaagtgtggaaaataaacctgcgtaaaagaaagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52768707 |
tggatgaaagagacaagtgtggaaaataaacctgcgtaaaagaaagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggc |
52768806 |
T |
|
| Q |
201 |
tacaagtcctccccttatttctgatggtgacaattctgcaatataaacgggagcagtaactgaagctatacccacgcccaaaccaaccaaaacacggcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52768807 |
tacaagtcctccccttatttctgatggtgacaattctgcaatatacacgggagcagtaactgaagctatacccacgcccaaaccaaccaaaacacggcca |
52768906 |
T |
|
| Q |
301 |
agtatgagaatataaggatctggcgcagcagccat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
52768907 |
agtatgagaatataaggatctggcgcagcagccat |
52768941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 38013711 - 38013902
Alignment:
| Q |
144 |
aagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggctacaagtcctccccttatttctgatggtgacaattctgcaata |
243 |
Q |
| |
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||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||| ||||||||||| |
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| T |
38013711 |
aagatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaata |
38013810 |
T |
|
| Q |
244 |
taaacgggagcagtaactgaagctatacccacgcccaaaccaaccaaaacacggccaagtatgagaatataaggatctggcgcagcagccat |
335 |
Q |
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|| || ||||| || || || |||| |||||| || | ||||| | || ||||||||||||||||| ||| | ||||||||| | |||||| |
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| T |
38013811 |
tatacaggagccgtgacagaggctacacccacaccaatgccaacaagaagacggccaagtatgagaacatatgcatctggcgcggaagccat |
38013902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 390272 - 390171
Alignment:
| Q |
234 |
ttctgcaatataaacgggagcagtaactgaagctatacccacgcccaaaccaaccaaaacacggccaagtatgagaatataaggatctggcgcagcagcc |
333 |
Q |
| |
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||||||||| || || ||||||||||| |||||||| || || ||||||||||| | || ||| || |||||||| ||||||||| || ||||||||| |
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| T |
390272 |
ttctgcaatgtagacaggagcagtaacagaagctatgccaacacccaaaccaacgagaagacgtcctgctatgagaacataaggatcaggtgcagcagcc |
390173 |
T |
|
| Q |
334 |
at |
335 |
Q |
| |
|
|| |
|
|
| T |
390172 |
at |
390171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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