View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_low_14 (Length: 338)
Name: NF6149_low_14
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 6753329 - 6753021
Alignment:
| Q |
18 |
aatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaaggaattcaagta |
117 |
Q |
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| T |
6753329 |
aatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaaggaattcaagta |
6753230 |
T |
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| Q |
118 |
ggaccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattga |
217 |
Q |
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| T |
6753229 |
gggccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattga |
6753130 |
T |
|
| Q |
218 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753129 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
6753030 |
T |
|
| Q |
318 |
catagccta |
326 |
Q |
| |
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||||||||| |
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| T |
6753029 |
catagccta |
6753021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 1811205 - 1811513
Alignment:
| Q |
18 |
aatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaaggaattcaagta |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| || |
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| T |
1811205 |
aatactctcctccacgtacttctgaaggaagaagaatttcattgaaatcactcataagaagccaaggaccattaagatgaggtcgtaagcaattcaaata |
1811304 |
T |
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| Q |
118 |
ggaccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattga |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811305 |
ggaccaaagatgatcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattga |
1811404 |
T |
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| Q |
218 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
1811405 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacgagcttcagaaattgcacaattct |
1811504 |
T |
|
| Q |
318 |
catagccta |
326 |
Q |
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||||||||| |
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| T |
1811505 |
catagccta |
1811513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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