View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6149_low_15 (Length: 313)

Name: NF6149_low_15
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6149_low_15
NF6149_low_15
[»] chr1 (13 HSPs)
chr1 (1-302)||(9348845-9349146)
chr1 (93-302)||(9318586-9318795)
chr1 (104-302)||(9319518-9319716)
chr1 (108-302)||(9349839-9350033)
chr1 (185-302)||(9255324-9255441)
chr1 (241-302)||(9433136-9433197)
chr1 (241-302)||(9486488-9486549)
chr1 (241-302)||(9454123-9454184)
chr1 (216-287)||(9056289-9056360)
chr1 (214-290)||(8931824-8931900)
chr1 (214-290)||(8955746-8955822)
chr1 (244-302)||(9399385-9399443)
chr1 (246-287)||(9082850-9082891)
[»] chr6 (1 HSPs)
chr6 (104-302)||(15927492-15927687)
[»] chr3 (1 HSPs)
chr3 (178-302)||(9159282-9159406)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 9349146 - 9348845
Alignment:
Q  1 acaaagtagaagtagaagtattataatagtcagcttcaacaagttagcgcccgcctaccaaacccttttcagattaatagtcagctgcaacaaagtggaa 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349146 acaaagtagaagtagaagtattataacagttagcttcaacaagttagtgcccgcctaccaaacccttttcagattaatagtcagctgcaacaaagtggaa 9349047  T
Q  101 ctgattaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||     
T  9349046 ctgattaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaaactagtagagccatcattttcagattcaatttcattagagtcgac 9348947  T
Q  201 gtcaaggtcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttc 300  Q
     || ||||||| ||||||  |||||| |||||| | ||| ||||||||||||||||||||||  ||||||| |||||| ||||||||||| ||||| |||    
T  9348946 ttctaggtcttactgaatattttcatctggataaagagaaggctttggaggcatttcaatatcctcaatatctccttcgagcatctctattactttattc 9348847  T
Q  301 at 302  Q
    ||    
T  9348846 at 9348845  T

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Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 93 - 302
Target Start/End: Complemental strand, 9318795 - 9318586
Alignment:
Q  93 aagtggaactgattaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcatta 192  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9318795 aagtggaactgattaagcagaattcatcaatagagactttgttgcatcttcgtcatcgattaaactagtagagccatcattttcagattcaatttcatta 9318696  T
Q  193 gagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatca 292  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9318695 gagttgacgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatca 9318596  T
Q  293 ctttgttcat 302  Q
    ||||||||||    
T  9318595 ctttgttcat 9318586  T

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Target: chr1; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 104 - 302
Target Start/End: Original strand, 9319518 - 9319716
Alignment:
Q  104 attaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtc 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9319518 attaagcagaattcatcaatagagactttgttgcatcttcgtcatcgattaaactagtagagccataattttcagattcaatttcattagagttgatgtc 9319617  T
Q  204 aaggtcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9319618 aaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 9319716  T

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Target: chr1; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 108 - 302
Target Start/End: Original strand, 9349839 - 9350033
Alignment:
Q  108 agcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtcaagg 207  Q
    |||||||||||  | ||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349839 agcagaattcaatattagagactttgttgcatcctcgtcgtcgattaaactagtagagccatcattttcagattcaatttcattagagttgatgtcaagg 9349938  T
Q  208 tcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349939 tcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 9350033  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 9255441 - 9255324
Alignment:
Q  185 tttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcat 284  Q
    |||||| ||||||||  ||||  ||| | ||||||||||||||||||||||   | ||||||||||||||||||| ||| ||||||| ||||||||||||    
T  9255441 tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctccttcaagcat 9255342  T
Q  285 ctctatcactttgttcat 302  Q
    |||||||||||| |||||    
T  9255341 ctctatcactttattcat 9255324  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 9433197 - 9433136
Alignment:
Q  241 ggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  9433197 ggctttggaggcatttcaatattttcaatatctccttcaagcatctctactactttgttcat 9433136  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 9486549 - 9486488
Alignment:
Q  241 ggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  9486549 ggctttggaggtatttcaatattttcaatatctccttcaagcatctctactactttgttcat 9486488  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 9454184 - 9454123
Alignment:
Q  241 ggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||  ||||| |||||    
T  9454184 ggctttggaggcatttccatattttcaatatctccttcaagcatctctactacttttttcat 9454123  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 9056289 - 9056360
Alignment:
Q  216 aatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctc 287  Q
    ||||||||||| |||||||||||  ||||  | |||||||||||  |||||||||| |||||||||||||||    
T  9056289 aatcatttcatctggatacaaagttggctccgaaggcatttcaaggttttcaatatctccttcaagcatctc 9056360  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 8931824 - 8931900
Alignment:
Q  214 tgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctat 290  Q
    ||||| |||||| |||||||   ||| ||||||||||| |||||||| | |||||||| |||||||||||| |||||    
T  8931824 tgaataatttcagttggatatggagaaggctttggaggaatttcaatgtcttcaatatctccttcaagcatttctat 8931900  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 8955746 - 8955822
Alignment:
Q  214 tgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctat 290  Q
    ||||| |||||| |||||||   ||| || |||||||| |||||||||| |||||||| |||||||||||| |||||    
T  8955746 tgaataatttcagttggatatggagaaggttttggaggaatttcaatatcttcaatatctccttcaagcatttctat 8955822  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 9399385 - 9399443
Alignment:
Q  244 tttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    |||||||| ||||||| | |||||||||  ||||||||||||||||  |||||||||||    
T  9399385 tttggaggaatttcaaaactttcaatatccccttcaagcatctctactactttgttcat 9399443  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 9082891 - 9082850
Alignment:
Q  246 tggaggcatttcaatattttcaatatttccttcaagcatctc 287  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  9082891 tggaggcatttcaagagtttcaatatctccttcaagcatctc 9082850  T

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Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 104 - 302
Target Start/End: Complemental strand, 15927687 - 15927492
Alignment:
Q  104 attaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtc 203  Q
    ||||||||||||||||||| |||||||| |||| |||||  |||   || || ||| ||||||||||||||||||||||| ||||||||||||||| |||    
T  15927687 attaagcagaattcatcaacagagactttgttgtatcttattca---atgaaactaatagagccatcattttcagattcagtttcattagagttgacgtc 15927591  T
Q  204 aaggtcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat 302  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |||||||    
T  15927590 aaggtcttcctcaatcatttcatttggatacaaagagggctttggaggcatttcaacattctcaatatctccttcaagcatctctatcactctgttcat 15927492  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 9159282 - 9159406
Alignment:
Q  178 gattcaatttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagacggctttggaggcatttcaatattttcaatatttcctt 277  Q
    ||||||||||||||||| ||||  || |||||||||| ||| |||||||||||| | ||||| || |||||||||||||||||||| |||||||||||||    
T  9159282 gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacagaaagaaggttttggaggcatttcaatattctcaatatttcctt 9159381  T
Q  278 caagcatctctatcactttgttcat 302  Q
    | ||||||||||| |||||||||||    
T  9159382 cgagcatctctattactttgttcat 9159406  T

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