View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6149_low_16 (Length: 312)
Name: NF6149_low_16
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 61 - 296
Target Start/End: Original strand, 5720022 - 5720257
Alignment:
| Q |
61 |
catctatgctaattattcgtttattaatatcataatactcttcttcaaaacaaatatcataatacttacttccaaccattctagagcttttgacggctcc |
160 |
Q |
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| T |
5720022 |
catctatgctaattattcgtttattaatatcataatactcttcttcaaaaaaaatatcataatacttacttccaaccattctagagcttttgacggctcc |
5720121 |
T |
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| Q |
161 |
caagctggtaaaccaccctttttaccctgcaaaaatgcatcaaaagtaaatcatgtagcataagaaaattgaacatcaatgataatagtactctatatat |
260 |
Q |
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| T |
5720122 |
caagctggtaaaccaccctttttaccctgcaaaaatgcatcaaaagtaaatcatgtagcataagaaaattgaacatcaatgataatagtactctatatat |
5720221 |
T |
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| Q |
261 |
gtttgcaaccggtgacttatagttgaccgtagatta |
296 |
Q |
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| T |
5720222 |
gtttggaaccggtgacttatagttgaccttagatta |
5720257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 5687956 - 5688092
Alignment:
| Q |
113 |
aatatcataatacttacttccaaccattctagagcttttgacggctcccaagctggtaaaccaccctttttaccctgcaaaaatgcatcaaaagtaaatc |
212 |
Q |
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| T |
5687956 |
aatatcataatacgtacttccaaccattctagagcttttgacggctcccaagctggtaaaccaccttttttaccctgcaaaaatgcatcaaaaataaatc |
5688055 |
T |
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| Q |
213 |
atgtagcataagaaaattgaacatcaatgataatagt |
249 |
Q |
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| T |
5688056 |
atgtagcataagaaaattgaacatcaatgataatagt |
5688092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 5666850 - 5666972
Alignment:
| Q |
113 |
aatatcataatacttacttccaaccattctagagcttttgacggctcccaagctggtaaaccaccctttttaccctgcaaaaatgcatcaaaagtaaatc |
212 |
Q |
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||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
5666850 |
aatatcacaagacttacttccaaccattctaaagcttctgatggctcccaagctggtaaaccacccttattaccctgcaacaatgcctcaaaagtaaatc |
5666949 |
T |
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| Q |
213 |
atgtagcataagaaaattgaaca |
235 |
Q |
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| T |
5666950 |
atgtagcataagaaaattgaaca |
5666972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 5667292 - 5667333
Alignment:
| Q |
244 |
aatagtactctatatatgtttgcaaccggtgacttatagttg |
285 |
Q |
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| T |
5667292 |
aatagtactctatatatgtatgcagccggtgacttatagttg |
5667333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 5687931 - 5687968
Alignment:
| Q |
61 |
catctatgctaattattcgtttattaatatcataatac |
98 |
Q |
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| T |
5687931 |
catctatgctaactattcgtttattaatatcataatac |
5687968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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