View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6149_low_19 (Length: 250)
Name: NF6149_low_19
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6149_low_19 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 4042567 - 4042336
Alignment:
| Q |
20 |
acttcgtatttatgtctatcttaatttgacttgcaaacaacaaatttcttcaattcactcgaaaaaa-caaatttcttcaattataaatgagttaggatt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4042567 |
actttgtatttatgtctatcttaatttgacttgcaaacaacaaatttcttcaattcactcaaaaaaaacaaatttcttcaattataaatgagttaggatt |
4042468 |
T |
|
| Q |
119 |
aaaaaattaacccgatcaaattttatacttaaaataggaaaatgtacaattaagccctcttgttcccacatcnnnnnnnaaaatgctaaaggataatatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4042467 |
aaaaaattaacccgatcaaattttatacttaaaataggaaaatgtacaattaagccctcttgttcccacatctttttttaaaatgctaaaggataatatt |
4042368 |
T |
|
| Q |
219 |
aagatttaagcccttttggtcacttgtacttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4042367 |
aagatttaagcccttttggtcacttgtacttc |
4042336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University