View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6149_low_3 (Length: 587)

Name: NF6149_low_3
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6149_low_3
NF6149_low_3
[»] chr8 (26 HSPs)
chr8 (12-315)||(27056562-27056859)
chr8 (307-501)||(27056336-27056532)
chr8 (163-315)||(9642358-9642504)
chr8 (534-587)||(27056251-27056304)
chr8 (219-315)||(29108829-29108920)
chr8 (300-374)||(15068498-15068572)
chr8 (219-315)||(39445583-39445674)
chr8 (223-315)||(17469249-17469336)
chr8 (219-315)||(27932403-27932494)
chr8 (219-315)||(32303051-32303142)
chr8 (163-201)||(9434978-9435016)
chr8 (304-370)||(9642277-9642343)
chr8 (219-313)||(45236055-45236144)
chr8 (219-315)||(8545356-8545447)
chr8 (220-315)||(20399583-20399673)
chr8 (271-316)||(15068594-15068639)
chr8 (264-315)||(10297488-10297539)
chr8 (219-315)||(24927939-24928030)
chr8 (156-195)||(36274971-36275010)
chr8 (304-374)||(24928057-24928127)
chr8 (219-257)||(30481481-30481519)
chr8 (304-374)||(32303169-32303239)
chr8 (220-257)||(1012610-1012647)
chr8 (304-369)||(9435153-9435218)
chr8 (271-315)||(1063544-1063588)
chr8 (271-315)||(5858659-5858703)
[»] chr7 (38 HSPs)
chr7 (12-315)||(5565314-5565612)
chr7 (163-315)||(10995841-10995982)
chr7 (304-375)||(5565216-5565287)
chr7 (101-192)||(27896603-27896694)
chr7 (219-315)||(45380102-45380193)
chr7 (219-315)||(10072461-10072552)
chr7 (219-313)||(33841073-33841162)
chr7 (220-314)||(12980373-12980462)
chr7 (219-315)||(16866164-16866255)
chr7 (221-315)||(18825879-18825968)
chr7 (219-315)||(3226953-3227044)
chr7 (264-316)||(18684009-18684061)
chr7 (271-315)||(27850333-27850377)
chr7 (219-315)||(17885460-17885551)
chr7 (219-315)||(21702654-21702745)
chr7 (264-315)||(31426043-31426094)
chr7 (219-315)||(35074465-35074556)
chr7 (219-315)||(39456022-39456112)
chr7 (264-315)||(42908048-42908099)
chr7 (219-315)||(43507440-43507531)
chr7 (163-201)||(8906704-8906742)
chr7 (265-314)||(3157119-3157168)
chr7 (235-312)||(32546203-32546275)
chr7 (238-313)||(29014961-29015037)
chr7 (271-315)||(41103698-41103742)
chr7 (235-315)||(5377096-5377171)
chr7 (235-315)||(22973399-22973474)
chr7 (308-370)||(8906503-8906565)
chr7 (304-374)||(17885578-17885648)
chr7 (225-315)||(27896482-27896567)
chr7 (304-374)||(35074583-35074653)
chr7 (304-373)||(10072579-10072648)
chr7 (275-312)||(10990871-10990908)
chr7 (264-313)||(30839143-30839192)
chr7 (271-315)||(16079055-16079099)
chr7 (271-315)||(28309534-28309578)
chr7 (271-315)||(41741457-41741501)
chr7 (306-374)||(44734269-44734337)
[»] chr4 (33 HSPs)
chr4 (39-314)||(10301900-10302170)
chr4 (304-373)||(10302198-10302267)
chr4 (235-315)||(29527824-29527899)
chr4 (125-181)||(45275362-45275418)
chr4 (219-315)||(5902622-5902713)
chr4 (219-315)||(6382280-6382371)
chr4 (219-315)||(7608966-7609057)
chr4 (264-315)||(43309519-43309570)
chr4 (219-315)||(44317531-44317622)
chr4 (220-315)||(1724318-1724408)
chr4 (163-201)||(3737720-3737758)
chr4 (219-313)||(47550363-47550452)
chr4 (271-315)||(32596192-32596236)
chr4 (219-315)||(11028069-11028160)
chr4 (272-315)||(12825469-12825512)
chr4 (219-315)||(31752452-31752543)
chr4 (219-315)||(48459477-48459568)
chr4 (220-315)||(6482043-6482133)
chr4 (220-311)||(26564828-26564914)
chr4 (300-374)||(45065359-45065433)
chr4 (264-376)||(31782649-31782768)
chr4 (271-312)||(39375321-39375362)
chr4 (304-376)||(37349226-37349298)
chr4 (300-375)||(1866459-1866534)
chr4 (236-315)||(3737789-3737863)
chr4 (221-313)||(15987272-15987359)
chr4 (219-315)||(31918566-31918657)
chr4 (264-315)||(41915004-41915055)
chr4 (300-346)||(10574370-10574416)
chr4 (163-201)||(43309426-43309464)
chr4 (304-374)||(43893341-43893411)
chr4 (264-312)||(10574430-10574478)
chr4 (275-315)||(11173020-11173060)
[»] chr2 (20 HSPs)
chr2 (94-201)||(10212273-10212380)
chr2 (307-370)||(22900906-22900969)
chr2 (163-315)||(22900729-22900876)
chr2 (219-315)||(15546735-15546826)
chr2 (219-315)||(7314655-7314746)
chr2 (219-314)||(24414140-24414230)
chr2 (309-374)||(10212520-10212585)
chr2 (271-315)||(37106730-37106774)
chr2 (223-315)||(30846941-30847028)
chr2 (304-375)||(30847055-30847126)
chr2 (219-315)||(37999474-37999565)
chr2 (304-370)||(15546853-15546919)
chr2 (235-313)||(38342528-38342601)
chr2 (163-196)||(15546676-15546709)
chr2 (271-312)||(37472769-37472810)
chr2 (313-374)||(39256370-39256431)
chr2 (264-313)||(43371584-43371633)
chr2 (235-315)||(14331534-14331609)
chr2 (304-374)||(6027811-6027881)
chr2 (300-374)||(26755845-26755919)
[»] chr1 (33 HSPs)
chr1 (79-201)||(38686514-38686641)
chr1 (163-313)||(10778576-10778721)
chr1 (219-315)||(29936407-29936498)
chr1 (165-315)||(34085170-34085317)
chr1 (219-315)||(18354087-18354178)
chr1 (271-315)||(5181077-5181121)
chr1 (219-315)||(17134938-17135029)
chr1 (300-375)||(19003575-19003650)
chr1 (219-315)||(19572519-19572610)
chr1 (219-315)||(36187227-36187318)
chr1 (219-313)||(28297925-28298014)
chr1 (264-316)||(19003672-19003724)
chr1 (271-314)||(3627993-3628036)
chr1 (264-315)||(16237311-16237362)
chr1 (219-315)||(23490778-23490869)
chr1 (219-315)||(51421849-51421940)
chr1 (304-374)||(20774675-20774745)
chr1 (308-374)||(38686763-38686829)
chr1 (274-324)||(44632139-44632189)
chr1 (271-315)||(24710885-24710929)
chr1 (300-347)||(10450014-10450061)
chr1 (219-257)||(13390404-13390442)
chr1 (219-257)||(23966864-23966902)
chr1 (304-374)||(29936531-29936601)
chr1 (265-315)||(33293538-33293588)
chr1 (271-313)||(42707846-42707888)
chr1 (274-315)||(16408983-16409024)
chr1 (272-313)||(16433176-16433217)
chr1 (275-315)||(23968621-23968661)
chr1 (271-315)||(35936836-35936880)
chr1 (300-376)||(37032416-37032492)
chr1 (310-346)||(39219361-39219397)
chr1 (156-201)||(45460157-45460204)
[»] chr3 (22 HSPs)
chr3 (94-198)||(10043401-10043505)
chr3 (163-315)||(30616288-30616437)
chr3 (219-315)||(23546949-23547040)
chr3 (219-315)||(44172616-44172707)
chr3 (219-315)||(44179316-44179407)
chr3 (219-314)||(39728661-39728751)
chr3 (271-315)||(48390824-48390868)
chr3 (232-315)||(10043289-10043367)
chr3 (304-375)||(39655182-39655253)
chr3 (220-315)||(4016051-4016141)
chr3 (304-374)||(7469688-7469758)
chr3 (219-257)||(34154404-34154442)
chr3 (271-315)||(44953442-44953486)
chr3 (300-375)||(1772308-1772383)
chr3 (308-371)||(10043195-10043258)
chr3 (219-315)||(34025944-34026035)
chr3 (219-315)||(39655280-39655371)
chr3 (219-315)||(49580054-49580145)
chr3 (219-256)||(22535902-22535939)
chr3 (221-315)||(44252739-44252828)
chr3 (274-315)||(49025720-49025761)
chr3 (273-313)||(43582616-43582656)
[»] scaffold0036 (1 HSPs)
scaffold0036 (220-315)||(33384-33474)
[»] chr6 (23 HSPs)
chr6 (219-315)||(5863390-5863481)
chr6 (219-315)||(27738762-27738853)
chr6 (219-315)||(32532530-32532621)
chr6 (219-315)||(32853834-32853925)
chr6 (220-315)||(2367317-2367407)
chr6 (219-315)||(3483930-3484021)
chr6 (219-315)||(32053078-32053169)
chr6 (304-374)||(3483833-3483903)
chr6 (226-313)||(14410864-14410946)
chr6 (304-373)||(10187991-10188060)
chr6 (274-315)||(18908933-18908974)
chr6 (230-312)||(29199895-29199972)
chr6 (271-311)||(20610993-20611033)
chr6 (235-315)||(28079703-28079778)
chr6 (271-315)||(30986290-30986334)
chr6 (219-315)||(10142525-10142616)
chr6 (219-315)||(12141375-12141466)
chr6 (265-312)||(20349095-20349142)
chr6 (304-375)||(30986361-30986432)
chr6 (304-374)||(31496542-31496612)
chr6 (304-374)||(31501928-31501998)
chr6 (274-315)||(14506126-14506167)
chr6 (271-307)||(9442467-9442503)
[»] chr5 (22 HSPs)
chr5 (219-315)||(4583109-4583200)
chr5 (219-315)||(4920816-4920907)
chr5 (305-376)||(10822447-10822518)
chr5 (236-315)||(10822534-10822608)
chr5 (219-315)||(15890197-15890287)
chr5 (219-315)||(17853301-17853391)
chr5 (300-374)||(2681320-2681394)
chr5 (163-201)||(10822647-10822685)
chr5 (219-313)||(12866561-12866650)
chr5 (237-314)||(23045000-23045072)
chr5 (235-312)||(28569032-28569104)
chr5 (219-311)||(22694913-22695000)
chr5 (219-257)||(1218745-1218783)
chr5 (308-374)||(4920938-4921004)
chr5 (219-257)||(10127071-10127109)
chr5 (219-257)||(12834635-12834673)
chr5 (300-378)||(23044898-23044976)
chr5 (274-343)||(27302714-27302784)
chr5 (304-374)||(33727912-33727982)
chr5 (271-312)||(33728012-33728053)
chr5 (274-315)||(38006477-38006518)
chr5 (287-375)||(18451833-18451921)
[»] scaffold0008 (2 HSPs)
scaffold0008 (300-374)||(67853-67927)
scaffold0008 (300-374)||(75696-75770)
[»] scaffold0244 (1 HSPs)
scaffold0244 (265-314)||(4589-4638)
[»] scaffold0022 (1 HSPs)
scaffold0022 (271-315)||(90634-90678)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 27056859 - 27056562
Alignment:
Q  12 atgaacccagaaatgtgatcagcgttgtgaatgaaatgaacctagaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27056859 atgaacccagaaatgtgatcagcgttgtgaatgaaatgaacccagaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaa 27056760  T
Q  112 tccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaa 211  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||       |||    
T  27056759 tccagaaaagtgtcgtctgacaatgacatctgccttttggactggagtgaaatgatctagcgttgtgtttctatttatataaaagggggtaaaaaagtaa 27056660  T
Q  212 nnnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaa 311  Q
           |||||||||||||||||| ||||||||||||||||||     |||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  27056659 -ttttttacatttgggacgagtatgtgtatgggttcggggtggg-----tagatataaccccgttacccgtcccatacctgtactttgaaatcgggaaaa 27056566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 307 - 501
Target Start/End: Complemental strand, 27056532 - 27056336
Alignment:
Q  307 ggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaagaatcggtttgaacggattacagctttccgg 406  Q
    |||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27056532 ggaaaacccgtcaaatcgagatgagtatgggcggatacccacgaggacgggtattgttgccatgcctaagaatcggtttgaacggattacagctttccgg 27056433  T
Q  407 ttcggcaaattgttcagtttggttggctcggtttgcccattttaggtcgcaaac--nnnnnnnnattaattcagagaatataatgaagttcttagta 501  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||||    
T  27056432 ttcagcaaattgttcagtttggttggctcggtttgcccatttttggtcgcaaacttttttttttattaattcagagaatataatgaagttcttagta 27056336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 9642504 - 9642358
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 262  Q
    |||||||||||||||||||||||||||||||||||||||       |||       |||||||||||| ||||| ||||||||||||| ||| || ||      
T  9642504 atgatctagggttgtgtttctatttatataaaaaggggtaaaaaaataatttttt-acatttgggacgggtatgagtatgggttcgggatggatatat-- 9642408  T
Q  263 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
       ||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9642407 ---ataaccccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 9642358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 27056304 - 27056251
Alignment:
Q  534 gatttattttctagatcttgaaaacatcaacaaataaaagtaaaatgcatctcc 587  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  27056304 gatttattttctggatctcgaaaacatcaacaaataaaagtaaaatgcatctcc 27056251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 29108920 - 29108829
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| |||||||||||||||||||||||||| ||   |||||  ||||||||||||||||||||| |  ||| |||||||| |||||||    
T  29108920 acatttgggacgggtatgggtatgggttcggggtgggtacat---atata--cccgttacccgtcccatacccatgttttaaaatcgggaaaaaccc 29108829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 15068572 - 15068498
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| ||| | ||| |||||||||||||| | | |||||| |||||||||||||||    
T  15068572 aaatcggggaaaacccgtcaaatcggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 15068498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 39445674 - 39445583
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||||||||| ||||||||||||||  |     |||| ||||||||| |||||||||||||  |||||||||||| |||||||    
T  39445674 acatttgggacgggtatgggtatgagttcggggtgggtacct-----ataaacccgttacctgtcccatacccgtgttttgaaatcgggaaaaaccc 39445583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 17469249 - 17469336
Alignment:
Q  223 ttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||| || |||||||||||| ||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  17469249 ttgggacgggtttgggtatgggtttggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 17469336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 27932403 - 27932494
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||  |||| ||||||||||||||||||||  |   |||||  |||||||| ||||||||||||||  ||||||||||||||||||||    
T  27932403 acatttgggacggatatgagtatgggttcggggtgggtacct---atata--cccgttactcgtcccatacccgtgttttgaaatcggggaaaaccc 27932494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 32303051 - 32303142
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  32303051 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 32303142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 9434978 - 9435016
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggt 201  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9434978 atgatctagggttgtgtttctatttatataaaaaggggt 9435016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 9642343 - 9642277
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 370  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||| | ||||| ||||||||||||||    
T  9642343 cggggaaaacccgtcaaaccgggatgggtctggacgggtacccatggggacgagtattgttgccatg 9642277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 45236055 - 45236144
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||||| |||||| |||||||||||||||||||  |   |||||  ||| |||||||||||||||||||  ||||||||| ||||||||    
T  45236055 acatttgggacgggtatggatatgggttcggggtgggtacct---atata--cccattacccgtcccatacccgtgttttgaaatcagggaaaac 45236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 8545447 - 8545356
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| || ||||||||||||||||||     ||  |||| ||||||||| ||| ||||||||||  ||||||||||| ||||||||    
T  8545447 acatttgggacgagtttgagtatgggttcggggtggg-----tatctatatccccgttactcgttccatacccgtgttttgaaatcggagaaaaccc 8545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 20399583 - 20399673
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||| |||||| || |||| ||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||| ||||||||    
T  20399583 cattcgggacgggtttgggaatgggttcggggtgggtatct---atata--cccgttacccgtcccatacccgtgttttgaaatcggagaaaaccc 20399673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 15068639 - 15068594
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaacccg 316  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||    
T  15068639 cccgttacctgtcccgtacccgtattttgaaatcggggaaaacccg 15068594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 10297488 - 10297539
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| |||||||||| ||||| | |||||| ||||||||||||||||||||    
T  10297488 atatatccccgttacctgtcccgtccccgtattttgaaatcggggaaaaccc 10297539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 24927939 - 24928030
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  ||||||||||||| |||||||||  || || ||| ||||||||||    
T  24927939 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtctcatacccgtgtttcgagatcagggaaaaccc 24928030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 36274971 - 36275010
Alignment:
Q  156 gagtgaaatgatctagggttgtgtttctatttatataaaa 195  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  36274971 gagtgaaatgatttagggttgggtttctatttatataaaa 36275010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 24928057 - 24928127
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | |||  ||||||||| || || | | |||| |||||||||||||||    
T  24928057 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 24928127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 30481519 - 30481481
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  30481519 acattcgggacgagtttgggtatgggttcggggtgggta 30481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 32303169 - 32303239
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | | |  ||||||||| ||||| | | |||| |||||||||||||||    
T  32303169 cggggaaaacccgtcaaattgggtttgtttcgggcgggtaaccacgggtatgggttttgttgccatgccta 32303239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 1012610 - 1012647
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  1012610 cattcgggacgagtttgggtatgggttcggggtgggta 1012647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 9435153 - 9435218
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccat 369  Q
    ||||||| ||||||||||| ||| ||| | ||||||| |||||| | | |||||||||||||||||    
T  9435153 cggggaatacccgtcaaatcggggtggatttgggcggatacccatgggaacgggtattgttgccat 9435218  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 1063544 - 1063588
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||    
T  1063544 cccgttaaccgtcccatacccgtgttttgaaatcgggaaaaaccc 1063588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 5858703 - 5858659
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||| |||||||| |||||||    
T  5858703 cccgttacccgtcccatacccgtgtttttaaatcgggaaaaaccc 5858659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 5565612 - 5565314
Alignment:
Q  12 atgaacccagaaatgtgatcagcgttgtgaatgaaatgaacctagaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaa 111  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565612 atgaacccagaaatgtgatcagcgttgtgaaagaaatgaacccagaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaa 5565513  T
Q  112 tccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaa 211  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         |    
T  5565512 tccagaaaagtgccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataaaagggggtaaaaaaagta 5565413  T
Q  212 nnnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaa 311  Q
           |||||||||| | ||||||||||||||| ||||||||     || ||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  5565412 attttttacatttgggatgtgtatgggtatgggttaggggtggg-----tacatataaccccgttacccatcccatatccgtactttgaaatcagggaaa 5565318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 10995982 - 10995841
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 262  Q
    ||||| |||||||||||||||||||||||||||||||||        ||       |||||||| ||| |||||||||||||||||||||||||| ||      
T  10995982 atgatatagggttgtgtttctatttatataaaaaggggtaa------aaaaaaattacatttggaacgggtatgggtatgggttcggggtgggtatat-- 10995891  T
Q  263 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
       ||||||| ||||||||||||||||||||   |||||||||||||||||||    
T  10995890 ---ataaccctgttacccgtcccatacccgtgtcttgaaatcggggaaaaccc 10995841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 5565287 - 5565216
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||| | ||||||||||||||| |||||||||    
T  5565287 cggggaaaatccgtcaaatcggggtgggtatgggcgggtacccatggggacgggtattgttgtcatgcctaa 5565216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 27896694 - 27896603
Alignment:
Q  101 ttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatata 192  Q
    ||||||||||| |||  |||||  |||||||||||||||| || | ||||||| |||||||||||||||||| |||||||| ||||||||||    
T  27896694 ttgagagagaacccatgaaagtgtcgtctgacaatgacatttgtcgtttggaccggagtgaaatgatctaggattgtgtttgtatttatata 27896603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 45380102 - 45380193
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| | |||||||||||||||||||||  |   |||||  |||||||||||||||||||||||| |||||||||||| |||||||    
T  45380102 acatttgggacgagtttaggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtattttgaaatcgggaaaaaccc 45380193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 10072461 - 10072552
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||  |||||||||||||||||||||||||  |   |||||  |||||||||||| ||||||||||  ||||||||||||||||||||    
T  10072461 acatttgggacggttatgggtatgggttcggggtgggtacct---atata--cccgttacccgttccatacccgtgttttgaaatcggggaaaaccc 10072552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 33841073 - 33841162
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||||| ||||| |||||||||||||||| ||| ||     ||||||  ||||||||||||||||||||  ||||||||||||||||||    
T  33841073 acatttgggacgggtatgagtatgggttcggggtgagtacat-----ataaccatgttacccgtcccatacccgtgttttgaaatcggggaaaac 33841162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 12980373 - 12980462
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    ||||||||||| || |||||||||||||||||||||||  |   |||||  ||| |||||||||||||||||||  |||||||||||||||||||    
T  12980373 catttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccattacccgtcccatacccgtgttttgaaatcggggaaaacc 12980462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 16866164 - 16866255
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||| ||||||||||||||  ||||| ||||||||||||||    
T  16866164 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttactcgtcccatacccgtgttttgagatcggggaaaaccc 16866255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 18825968 - 18825879
Alignment:
Q  221 atttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||| | || |||||| ||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  18825968 atttgggatgggtttgggtacgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 18825879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 3227044 - 3226953
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||| | ||||| ||||||||||||||||||||  |     |||  || ||||||||||||||||||||  ||||||||||||||||||||    
T  3227044 acatttgggatgtgtatgagtatgggttcggggtgggtacct-----atattcctgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 3226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 18684009 - 18684061
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacccg 316  Q
    ||||| ||| |||||||||||| |||||||| |||||||||||||||||||||    
T  18684009 atatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaacccg 18684061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 27850377 - 27850333
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  27850377 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 27850333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 17885460 - 17885551
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||||||||||||||||||| || |  |   |||||  ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  17885460 acatttgggacgggtatgggtatgggttcggggttggaacct---atata--cccgttacccgtcccatacccatgttttaaaatcggggaaaaccc 17885551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 21702654 - 21702745
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||  ||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  21702654 acatttgggacgggttggggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 21702745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 31426043 - 31426094
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  31426043 atatatccccgttacccgtctcatacccgtatttttaaatcggggaaaaccc 31426094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 35074465 - 35074556
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||| ||||||  |   |||||  |||||||||||||||||||||||  ||| | ||||||||||||||    
T  35074465 acatttgggacgggtttgggtatgggttcgggttgggtacct---atata--cccgttacccgtcccatacccgtgttttaagatcggggaaaaccc 35074556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 39456112 - 39456022
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||| |||||| |||||||||||||  |   |||||  ||||||||||||||||||||| |  ||||||||||||||||||||    
T  39456112 acatttgggacgggtatgagtatgg-ttcggggtgggtacct---atata--cccgttacccgtcccatacccatgttttgaaatcggggaaaaccc 39456022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 42908099 - 42908048
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| |||| ||||||||||| |||||||| ||||||||||||||||||||    
T  42908099 atatatccccattacccgtcccgtacccgtattttgaaatcggggaaaaccc 42908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 43507440 - 43507531
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||| ||||||||||| |||||||| |  || |||    ||||||||||||| ||||||| |  ||||||||||||||||||||    
T  43507440 acatttgggacgagtataggtatgggttcagggtgggt-gcctatata----cccgttacccgtctcatacccatgttttgaaatcggggaaaaccc 43507531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 8906742 - 8906704
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggt 201  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8906742 atgatctaaggttgtgtttctatttatataaaaaggggt 8906704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 3157119 - 3157168
Alignment:
Q  265 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    |||| |||||||| ||||||||||||| || |||||||||||||||||||    
T  3157119 tatatccccgttatccgtcccatacccatattttgaaatcggggaaaacc 3157168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 32546203 - 32546275
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    ||||||||||||||||||||||| ||     ||| ||||||||||||| || |||||||| |||||||||||| ||||    
T  32546203 tgggtatgggttcggggtgggtacat-----atatccccgttacccgttccgtacccgtattttgaaatcgggaaaaa 32546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 29015037 - 29014961
Alignment:
Q  238 gtatgggttcggggtgggtagat-tagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||||||||||||||| || || || ||||| ||||| || ||||||| |||||||| |||||||||||| |||||    
T  29015037 gtatgggttcggggtggatatatatatatatatccccgctatccgtcccgtacccgtattttgaaatcgggaaaaac 29014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 41103698 - 41103742
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||    
T  41103698 cccgttaaccgtcccatacccgtgttttgaaatcggggaaaaccc 41103742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 5377096 - 5377171
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  |   |||||  ||| |||||||||||||||| ||  ||||||||||||||||||||    
T  5377096 tgggtatgggttcggggtgggtacct---atata--ccctttacccgtcccatacctgtgttttgaaatcggggaaaaccc 5377171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 22973399 - 22973474
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||| |||||||| |   |||||  |||| ||||||||||| |||||||| |||||||||| |||||||||    
T  22973399 tgggtatgggttcgaggtgggtaca---gatat--ccccattacccgtcccgtacccgtattttgaaatcgtggaaaaccc 22973474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 8906565 - 8906503
Alignment:
Q  308 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 370  Q
    ||||||||||||||| ||  ||||| |||||||||||||| |   ||||||||||||||||||    
T  8906565 gaaaacccgtcaaatcggagtgggtttgggcgggtacccatggaaacgggtattgttgccatg 8906503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 17885578 - 17885648
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | |||  |||| |||| ||||| | | |||| |||||||||||||||    
T  17885578 cggggaaaacccgtcaaattgggtttggttcgggcaggtaaccacgggtatgggttttgttgccatgccta 17885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 27896567 - 27896482
Alignment:
Q  225 gggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||| ||||||||||| ||||||||| |||  ||     |||||||||||||||||||||||||| |  ||||||||  ||||||||||    
T  27896567 gggacgggtatgggtatgagttcggggttggtgcat-----ataaccccgttacccgtcccatacccatgttttgaaataagggaaaaccc 27896482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 35074583 - 35074653
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||| ||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  35074583 cggggaaaacccgtctaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 35074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 10072579 - 10072648
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcct 373  Q
    ||||||||||||||||||||||| | |||  ||||||||| || || | | |||| ||||||||||||||    
T  10072579 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcct 10072648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 10990908 - 10990871
Alignment:
Q  275 ttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  10990908 ttacccgtcccgtacccgtattttgaaatcggggaaaa 10990871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 30839192 - 30839143
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||| || |||||| ||||||||||||||| ||||||||| ||||||||    
T  30839192 atatatccacgttactcgtcccatacccgtattttgaaatcagggaaaac 30839143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 16079055 - 16079099
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||| ||||| ||||||||    
T  16079055 cccgttacccgtcccatacccgtgttttgagatcggagaaaaccc 16079099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 28309534 - 28309578
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| |||||||| ||||||||| |||| |||||    
T  28309534 cccgttacccgtcccgtacccgtattttgaaatcagggagaaccc 28309578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 41741501 - 41741457
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||    
T  41741501 cccgttatccgtctcatacccgtgttttgaaatcggggaaaaccc 41741457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 44734337 - 44734269
Alignment:
Q  306 gggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||| | |||  ||||||||| || |||| | | || |||||||||||||||    
T  44734337 gggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgccatgccta 44734269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 39 - 314
Target Start/End: Original strand, 10301900 - 10302170
Alignment:
Q  39 tgaatgaaatgaacctagaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaatccagaaaagtaccgtctgacaatg-a 137  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |    
T  10301900 tgaatgaaatgaacccagaaattcaatattgaattaccagctttgtgagcagcgttaactgcttgagagagaatccagaaaagtgccgtctgacaatgaa 10301999  T
Q  138 catctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgg 237  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||       |||       ||||||||||||  |||||    
T  10302000 catctcccttttggaccggagtgaaatgatctagggttgtgtttctatttatataaaaggtggtaaaaaagtaa-ttttttacatttgggacggatatgg 10302098  T
Q  238 gtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    ||||||||||||||||||     || |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10302099 gtatgggttcggggtggg-----tacatataaccccgttacccgtctcatacccgtactttgaaatcggggaaaacc 10302170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 10302198 - 10302267
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcct 373  Q
    |||||||||||| |||||| ||  |||||||||||||||||||||| | |||||||||||||||||||||    
T  10302198 cggggaaaacccatcaaatcggagtgggtatgggcgggtacccacgggaacgggtattgttgccatgcct 10302267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 29527824 - 29527899
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||||||||| ||     ||| |||||||||||||| | |||||||| ||||||||||||||||||||    
T  29527824 tgggtatgggttcggggtgggtacat-----atatccccgttacccgtcacgtacccgtattttgaaatcggggaaaaccc 29527899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 45275362 - 45275418
Alignment:
Q  125 cgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgttt 181  Q
    |||||||||||||||| || | ||||||| |||||||||||||||||||||||||||    
T  45275362 cgtctgacaatgacatttgtcgtttggaccggagtgaaatgatctagggttgtgttt 45275418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 5902713 - 5902622
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  5902713 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 5902622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 6382371 - 6382280
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||| ||||||||    
T  6382371 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggagaaaaccc 6382280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 7608966 - 7609057
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  7608966 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 7609057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 43309519 - 43309570
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  43309519 atataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaaccc 43309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 44317531 - 44317622
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  44317531 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 44317622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 1724408 - 1724318
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||| |||||| || |||||||||||||||||||||||  |   ||||||||  |||||||||||||||||| |  ||||||||||||||||||||    
T  1724408 cattcgggacgggtttgggtatgggttcggggtgggtacct---atataacc--gttacccgtcccatacccatgttttgaaatcggggaaaaccc 1724318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 3737720 - 3737758
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggt 201  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3737720 atgatctagggttgtgtttctatttatataaaaaggggt 3737758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 47550452 - 47550363
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  || ||||||||||||||||||||  ||||| ||||||||||||    
T  47550452 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cctgttacccgtcccatacccgtgttttgagatcggggaaaac 47550363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 32596236 - 32596192
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  32596236 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 32596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 11028069 - 11028160
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||  || |||||||| ||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  11028069 acatttgggacaggtttgggtatgagttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 11028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 12825512 - 12825469
Alignment:
Q  272 ccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  12825512 ccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 12825469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 31752452 - 31752543
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| |||||||||||||||||||||||| |  |   |||||  | |||||| |||| |||||||||  ||||||||||||||||||||    
T  31752452 acatttgggacgggtatgggtatgggttcggggtgggaacct---atata--ctcgttactcgtctcatacccgtgttttgaaatcggggaaaaccc 31752543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 48459477 - 48459568
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||| | ||||||||||||||||||||||||||  |   |||||  || ||||||||| |||||||| |  ||||||||||||||||||||    
T  48459477 acatttgggatgggtatgggtatgggttcggggtgggtacct---atata--cctgttacccgttccatacccatgttttgaaatcggggaaaaccc 48459568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 6482133 - 6482043
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||| || ||||||||||||||||||||||| ||   |||||  ||| |||| ||||||||||||||  ||| |||| |||||||||||    
T  6482133 catttgggacgggtttgggtatgggttcggggtgggtacat---atata--ccctttactcgtcccatacccgtgtttttaaattggggaaaaccc 6482043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 26564828 - 26564914
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaa 311  Q
    ||||||||||| || ||||||||| |||||||||||||  |   |||||  ||||||||||||||||||||||   ||||||||||||||||    
T  26564828 catttgggacgggtttgggtatggtttcggggtgggtacct---atata--cccgttacccgtcccatacccgcgttttgaaatcggggaaa 26564914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 45065359 - 45065433
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    |||| ||||||||| |||||||| ||| | ||| |||||||||||||| | | |||||| |||||||||||||||    
T  45065359 aaattggggaaaactcgtcaaatcggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 45065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 31782649 - 31782768
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc-------gtcaaattgggatgggtatgggcgggtacccacgaggacgg 356  Q
    ||||| |||||||||| || || |||||||| ||||||||||||||||||||       ||||||| | | | ||| |||||||||||||| | | ||||    
T  31782649 atatatccccgttacctgtaccgtacccgtattttgaaatcggggaaaacccaaacccagtcaaatcgaggttggtttgggcgggtacccatgggcacgg 31782748  T
Q  357 gtattgttgccatgcctaag 376  Q
     | |||||||||||||||||    
T  31782749 attttgttgccatgcctaag 31782768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 39375321 - 39375362
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  39375321 cccgttacccgtcctatacccgtattttgaaatcggggaaaa 39375362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 37349226 - 37349298
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaag 376  Q
    ||||||||||| ||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||||    
T  37349226 cggggaaaacctgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaag 37349298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 1866534 - 1866459
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||||||| ||||||||| ||| | ||| |||||| ||||||||| | |||||| |||||| | |||||||    
T  1866534 aaatcggggaaaatccgtcaaatcggggttggtttgggcgagtacccacgtgcacgggttttgttgtcttgcctaa 1866459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 3737789 - 3737863
Alignment:
Q  236 gggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| |||||| ||     |||||| |||||||||||||||||||||  |||||||| ||| |||||||    
T  3737789 gggtatgggttcgggatgggtacat-----ataacctcgttacccgtcccatacccgtgttttgaaattgggaaaaaccc 3737863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 15987359 - 15987272
Alignment:
Q  221 atttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||| || |||||||||||||||||||||||   |  |||||  |||||||||| ||||||||||||  ||| ||||| ||||||||    
T  15987359 atttgggacgggtttgggtatgggttcggggtgggta---tctatata--cccgttacccatcccatacccgtgttttaaaatctgggaaaac 15987272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 31918657 - 31918566
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || ||||||||||||||||||||||| | || |||    ||| |||| ||||||||||||||  || || ||||||||||||||    
T  31918657 acatttgggacgggtttgggtatgggttcggggtgggta-actatata----cccattactcgtcccatacccgtgtttcgagatcggggaaaaccc 31918566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 41915055 - 41915004
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| ||||||||||| |||| ||||| || ||||||||||||||||||||    
T  41915055 atatatccccgttacccttcccgtacccatattttgaaatcggggaaaaccc 41915004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 10574416 - 10574370
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtaccc 346  Q
    ||||||||||||||||||||||| ||||| | | |||||||||||||    
T  10574416 aaatcggggaaaacccgtcaaatcgggattgatttgggcgggtaccc 10574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 43309426 - 43309464
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggt 201  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  43309426 atgatcttgggttgtgtttctatttatataaaaatgggt 43309464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 43893341 - 43893411
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | ||   ||||||||| ||||| | | |||| |||||||||||||||    
T  43893341 cggggaaaacccgtcaaattgggtttggctcgggcgggtaaccacgggtatgggttttgttgccatgccta 43893411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 10574478 - 10574430
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    ||||| |||||||||||||||| |||| ||| | |||||||||||||||    
T  10574478 atatatccccgttacccgtcccgtacctgtattatgaaatcggggaaaa 10574430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 11173020 - 11173060
Alignment:
Q  275 ttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| ||||| |||||||| ||||||||||||||||||||    
T  11173020 ttacctgtcccgtacccgtattttgaaatcggggaaaaccc 11173060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 10212273 - 10212380
Alignment:
Q  94 tgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataa 193  Q
    |||||||||||||||||| |||| ||| |  ||| |||||||||||||| |  |||||||| |||||||||||| ||||||||||||| |||||||||||    
T  10212273 tgactgcttgagagagaacccagcaaaatgtcgtgtgacaatgacatcttctgtttggactagagtgaaatgatatagggttgtgtttgtatttatataa 10212372  T
Q  194 aaaggggt 201  Q
    ||||||||    
T  10212373 aaaggggt 10212380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 22900906 - 22900969
Alignment:
Q  307 ggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 370  Q
    |||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||||||||||    
T  22900906 ggaaaacccgtcaaatcgggatgggttagggcgggtacccatgaggacgggtattgttgccatg 22900969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 22900729 - 22900876
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 262  Q
    ||||||||||||||||||||||||||| |||||||||||         |       || ||||||||| ||||||||||| |||||||||||||| ||      
T  22900729 atgatctagggttgtgtttctatttatgtaaaaaggggtaaaaaaaataattttttacgtttgggacgggtatgggtatgagttcggggtgggtatat-- 22900826  T
Q  263 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
       ||||||||||||| ||||||||||||||  |||||||||||| |||||||    
T  22900827 ---ataaccccgttactcgtcccatacccgtgttttgaaatcgggaaaaaccc 22900876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 15546735 - 15546826
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||| | |||||||||||||||| ||||||||| ||     ||||||  ||||||||||||||||||||  ||||||||||||||||||||    
T  15546735 acatttgggaagggtatgggtatgggttcagggtgggtatat-----ataaccatgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 15546826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 7314746 - 7314655
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || ||||||||||||||||||||| |  |   |||||  ||||||||||||||||||| |||| ||| ||||||||||||||||    
T  7314746 acatttgggacgggtgtgggtatgggttcggggtgggaacct---atata--cccgttacccgtcccatactcgtattttaaaatcggggaaaaccc 7314655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 24414230 - 24414140
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  || ||||||||||||||||||||  ||||| |||||||||||||    
T  24414230 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cctgttacccgtcccatacccgtgttttgagatcggggaaaacc 24414140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 10212520 - 10212585
Alignment:
Q  309 aaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||| |||||||| ||| |||||||||||||||||||||  | ||||||||||||| ||||||||    
T  10212520 aaaactcgtcaaatcggggtgggtatgggcgggtacccacaggtacgggtattgttgtcatgccta 10212585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 37106730 - 37106774
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  37106730 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 37106774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 30846941 - 30847028
Alignment:
Q  223 ttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  30846941 ttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 30847028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 30847055 - 30847126
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| ||||||||||||||||    
T  30847055 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 30847126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 37999474 - 37999565
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||| ||||||||||||||  |   |||||  ||||||||||||| |||||||||  ||||| ||||||||||||||    
T  37999474 acatttgggacgggtttgggtatgagttcggggtgggtactt---atata--cccgttacccgtctcatacccgtgttttgagatcggggaaaaccc 37999565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 15546853 - 15546919
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 370  Q
    |||||||||| |||||||| ||| || || |||||||||||||| | ||| ||||||||||||||||    
T  15546853 cggggaaaactcgtcaaatgggggtgagtttgggcgggtacccatggggatgggtattgttgccatg 15546919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 38342601 - 38342528
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||||||||||||||||||||| ||     ||| |||||||||||||||| || ||||| ||| ||||||||||||||    
T  38342601 tgggtatgggttcggggtgggtacat-----atatccccgttacccgtcccgtatccgtattttaaaatcggggaaaac 38342528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 15546676 - 15546709
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaa 196  Q
    ||||||||||||||||||||||||||||||||||    
T  15546676 atgatctagggttgtgtttctatttatataaaaa 15546709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 37472810 - 37472769
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  37472810 cccgttacccgtcccatacccgtgttttgaaatcggggaaaa 37472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 39256431 - 39256370
Alignment:
Q  313 cccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    |||||||||||||| | ||| |||||||||||||| | | |||||| |||||||||||||||    
T  39256431 cccgtcaaattggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 39256370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 43371584 - 43371633
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||||||    
T  43371584 atatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaac 43371633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 14331534 - 14331609
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| ||||||| ||     ||| ||||||||||||||||||||| ||| ||| |||| |||||||||||    
T  14331534 tgggtatgggttcggagtgggtacat-----atatccccgttacccgtcccatacctgtatttttaaataggggaaaaccc 14331609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 6027881 - 6027811
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | |||  |||||| || ||||||| | |||| |||||| ||||||||    
T  6027881 cggggaaaacccgtcaaattgggtttggttcgggcggataaccacgagtatgggttttgttgtcatgccta 6027811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 26755845 - 26755919
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    |||||||| |||||||||||||| ||| | ||| ||||| |||||||| | | |||||| |||||| ||||||||    
T  26755845 aaatcgggaaaaacccgtcaaatcggggttggtttgggcaggtacccatgggcacgggttttgttgtcatgccta 26755919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 38686514 - 38686641
Alignment:
Q  79 ctttgtgagcagcgttgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatg-----atctaggg 173  Q
    ||||||||||   |||||||||||||||||||| ||||||||||  ||||||||| |||||||| || |||| ||||||||||||||     ||||||||    
T  38686514 ctttgtgagcgatgttgactgcttgagagagaacccagaaaagtgtcgtctgacagtgacatcttccatttgaactggagtgaaatgaaataatctaggg 38686613  T
Q  174 ttgtgtttctatttatataaaaaggggt 201  Q
    |||| ||| |||||||||| ||||||||    
T  38686614 ttgtctttgtatttatatagaaaggggt 38686641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 313
Target Start/End: Complemental strand, 10778721 - 10778576
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 262  Q
    |||||||||||||||||||||||||||||||||||||||       ||        ||||||| |||| ||||| |||||||||||||||||      ||    
T  10778721 atgatctagggttgtgtttctatttatataaaaaggggtaaaaaaatattttttttacatttgagacgggtatgagtatgggttcggggtgg-----ata 10778627  T
Q  263 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
      |||||||||||||||||||||||||||||  |||||||||||| |||||    
T  10778626 tctataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaac 10778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 29936407 - 29936498
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||| ||||| ||||||||||||||    
T  29936407 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtattttgagatcggggaaaaccc 29936498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 34085170 - 34085317
Alignment:
Q  165 gatctagggttgtgtttctatttatataaaaaggggtnnnnnnnta--annnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 262  Q
    |||||||||||||||||||||||||||||||||||||        |  |       |||||| ||||||||||||||||||||||||||||||     ||    
T  34085170 gatctagggttgtgtttctatttatataaaaaggggtaaaaaaaaaataattttttacatttaggacgagtatgggtatgggttcggggtggg-----ta 34085264  T
Q  263 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
     ||||||||||||||||| |||||||| |||  |||||||||||| |||||||    
T  34085265 catataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaaccc 34085317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 18354178 - 18354087
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||||||||| ||||||||||||| |  |   |||||  ||||||||||||||||||||| |  ||||||||||||||||||||    
T  18354178 acatttgggacgagtatgggtatcggttcggggtgggaactt---atata--cccgttacccgtcccatacccatgttttgaaatcggggaaaaccc 18354087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 5181077 - 5181121
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  5181077 cccgttacccgtcccatacccgtattttgaaatcggggaaaaccc 5181121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 17134938 - 17135029
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||| ||||||||||||||||||||||||||||  ||||  |   |||||  ||||||||||||| |||||||||  ||||||||||||||||||||    
T  17134938 acatatgggacgagtatgggtatgggttcggggatggtacct---atata--cccgttacccgtctcatacccgtgttttgaaatcggggaaaaccc 17135029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 19003650 - 19003575
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||||||||||||||||| ||| | | | |||||||||||||| | | |||||| ||||||||||||||||    
T  19003650 aaatcggggaaaacccgtcaaatcggggttgctttgggcgggtacccatgggcacgggttttgttgccatgcctaa 19003575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 19572610 - 19572519
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||| ||||||||||||||||||||  |   |||||  ||||||||| |||||||||||||  |||||||||||| |||||||    
T  19572610 acatttgggacgggtatgagtatgggttcggggtgggtacct---atata--cccgttacctgtcccatacccgtgttttgaaatcgggaaaaaccc 19572519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 36187318 - 36187227
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || ||||||||||||| |||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  36187318 acatttgggacgggtttgggtatgggttcagggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 36187227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 28297925 - 28298014
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||    
T  28297925 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaac 28298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 19003724 - 19003672
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacccg 316  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||||||||||    
T  19003724 atatatccccgttatccgtcccatacccgtattttgtaatcggggaaaacccg 19003672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 3628036 - 3627993
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  3628036 cccgttacccgtcccatacccgtgttttgaaatcggggaaaacc 3627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 16237362 - 16237311
Alignment:
Q  264 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| || ||||||||||||| |||||||| ||||||||||||||||||||    
T  16237362 atatatcctcgttacccgtcccttacccgtattttgaaatcggggaaaaccc 16237311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 23490869 - 23490778
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || | |||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  23490869 acatttgggacgggttttggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 23490778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 51421849 - 51421940
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || ||||||||||||||||||||||| ||   |||||  |  ||||||||||||||||||||  ||||| |||||| |||||||    
T  51421849 acatttgggacgggtttgggtatgggttcggggtgggtacat---atata--catgttacccgtcccatacccgtgttttgagatcgggaaaaaccc 51421940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 20774675 - 20774745
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||| ||||||||||||| | |||  ||||||||| ||||||| | |||| |||||||||||||||    
T  20774675 cggggaaaatccgtcaaattgggtttggttcgggcgggtaaccacgagtatgggttttgttgccatgccta 20774745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 38686763 - 38686829
Alignment:
Q  308 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    |||||||||| |||| ||||||||||| |||||||||||||| | ||  ||||||||| ||||||||    
T  38686763 gaaaacccgtaaaatcgggatgggtataggcgggtacccacgggtacatgtattgttgtcatgccta 38686829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 44632189 - 44632139
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaacccgtcaaattg 324  Q
    ||||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  44632189 gttacccgtcccatacccgtgttttgaaatcggagaaaaccagtcaaattg 44632139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 24710885 - 24710929
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  24710885 cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 24710929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 10450061 - 10450014
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtaccca 347  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||    
T  10450061 aaattggggaaaacccgtcaaattggggttggtttgggcgggtaccca 10450014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 13390404 - 13390442
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  13390404 acatttgggacgggtatgggtatgagttcggggtgggta 13390442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 23966864 - 23966902
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  23966864 acatttgggacgggtatgagtatgggttcggggtgggta 23966902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 29936531 - 29936601
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| |||||| ||||||||    
T  29936531 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcatgccta 29936601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 33293588 - 33293538
Alignment:
Q  265 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||| |||| |||||||||||||||||||  |||||||||||| |||||||    
T  33293588 tatatccccattacccgtcccatacccgtgttttgaaatcgggaaaaaccc 33293538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 42707888 - 42707846
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  42707888 cccgttacccgtcccatacccgtgttttgaaatcggagaaaac 42707846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 16408983 - 16409024
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  16408983 gttacccgtcccatacccgtgttttgaaattggggaaaaccc 16409024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 16433217 - 16433176
Alignment:
Q  272 ccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||||||||||||||||||||  ||||||||||| ||||||    
T  16433217 ccgttacccgtcccatacccgtgttttgaaatcggagaaaac 16433176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 23968621 - 23968661
Alignment:
Q  275 ttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||  ||||||| ||||||||||||    
T  23968621 ttacccgtcccatacccgtgttttgaaaccggggaaaaccc 23968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 35936880 - 35936836
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||| ||||||||||| |||  ||||||||||||||||||||    
T  35936880 cccgttatccgtcccatactcgtgatttgaaatcggggaaaaccc 35936836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 37032416 - 37032492
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaag 376  Q
    ||||| || ||||||||||||||  |||| ||| | ||||| || ||| ||| |||||| |||||||||||||||||    
T  37032416 aaatcaggaaaaacccgtcaaatcaggattggtttcggcggatatccatgagcacgggttttgttgccatgcctaag 37032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 39219361 - 39219397
Alignment:
Q  310 aaacccgtcaaattgggatgggtatgggcgggtaccc 346  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  39219361 aaacccgtcaaattgggattggtttgggcgggtaccc 39219397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 45460204 - 45460157
Alignment:
Q  156 gagtgaaatgatctaggg--ttgtgtttctatttatataaaaaggggt 201  Q
    |||||||||||| |||||  || |||||||||||||||||||||||||    
T  45460204 gagtgaaatgatttaggggtttatgtttctatttatataaaaaggggt 45460157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 10043505 - 10043401
Alignment:
Q  94 tgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataa 193  Q
    ||||||||||||||| || ||| ||||||  |||||||||||||||| || | || ||||  ||||||||||||||||| |||||||| |||||||||||    
T  10043505 tgactgcttgagagaaaacccataaaagtgtcgtctgacaatgacatttgtcgttcggaccagagtgaaatgatctaggtttgtgtttgtatttatataa 10043406  T
Q  194 aaagg 198  Q
    |||||    
T  10043405 aaagg 10043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 30616437 - 30616288
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnnta--annnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagat 260  Q
    |||||||||||||||||||||||||||||||||||||||        |  |       || ||||||||| |||||||||||||||||||||||     |    
T  30616437 atgatctagggttgtgtttctatttatataaaaaggggtaaaaaaaaaataattttttacgtttgggacgggtatgggtatgggttcggggtgg-----t 30616343  T
Q  261 tagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    || |||||||| |||||||||||||||| ||||  ||||||||||||||||||||    
T  30616342 tatatataacctcgttacccgtcccatatccgtgttttgaaatcggggaaaaccc 30616288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 23547040 - 23546949
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  23547040 acatttgggacgagtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 23546949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 44172616 - 44172707
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  44172616 acatttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 44172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 44179316 - 44179407
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  44179316 acatttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 44179407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 39728661 - 39728751
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    |||||||||||| || |||||||||||||||||||||||  ||| |||    |||||||||| ||||||||||||| ||||| |||| ||||||||    
T  39728661 acatttgggacgggtttgggtatgggttcggggtgggta-cttatata----cccgttacccatcccatacccgtattttgagatcgaggaaaacc 39728751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 48390868 - 48390824
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  48390868 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 48390824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 10043367 - 10043289
Alignment:
Q  232 gtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||||  ||     |||||||||||||||||||||||||| |  ||||||| | ||||||||||    
T  10043367 gtatgggtatgggttcggggtgggtgcat-----ataaccccgttacccgtcccatacccatgttttgaaaccagggaaaaccc 10043289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 39655253 - 39655182
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| ||||||||||||||||    
T  39655253 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 39655182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 4016141 - 4016051
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||| ||||||||| ||||||||||||||| |||||||  |   |||||  ||||||| ||||||||||||| |  ||||||||||||||||||||    
T  4016141 cattcgggacgagtttgggtatgggttcggagtgggtacct---atata--cccgttatccgtcccatacccatgttttgaaatcggggaaaaccc 4016051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 7469758 - 7469688
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  7469758 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 7469688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 34154404 - 34154442
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  34154404 acatttgggacgggtatgggtatgggttcggggtgggta 34154442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 44953486 - 44953442
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  44953486 cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 44953442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 1772383 - 1772308
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||||||| ||||||||| ||||| ||| ||||| |||||||| | | ||  || ||||||||||||||||    
T  1772383 aaatcggggaaaatccgtcaaatcgggattggtttgggcaggtacccatgggcacatgttttgttgccatgcctaa 1772308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 10043258 - 10043195
Alignment:
Q  308 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgc 371  Q
    ||||||||||||||||||| | ||||||| ||||||||||||   ||| ||||||||| |||||    
T  10043258 gaaaacccgtcaaattggggttggtatggtcgggtacccacggatacgagtattgttgtcatgc 10043195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 34025944 - 34026035
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||||||||| |||||||||||  |  |   |||||  | |||||||||||||||||| ||  ||||||||||||||||||||    
T  34025944 acatttgggacgggtatgggtatgagttcggggtggaaacct---atata--ctcgttacccgtcccatacctgtgttttgaaatcggggaaaaccc 34026035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 39655371 - 39655280
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||| |||| || |||||||||||| ||||||||||  |   |||||  || ||||||||||||||||||||  ||||| ||||||||||||||    
T  39655371 acatttgagacgggtttgggtatgggtttggggtgggtacct---atata--cctgttacccgtcccatacccgtgttttgagatcggggaaaaccc 39655280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 49580054 - 49580145
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || || ||||||||||| ||||||||  |   |||||  | |||||||||||||||||||||  ||||| ||||||||||||||    
T  49580054 acatttgggacgggtttgagtatgggttcgaggtgggtacct---atata--ctcgttacccgtcccatacccgtgttttgagatcggggaaaaccc 49580145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 22535939 - 22535902
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggt 256  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  22535939 acatttaggacgagtatgtgtatgggttcggggtgggt 22535902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 44252739 - 44252828
Alignment:
Q  221 atttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||| || |||||||||||||||||||||||  |   |||||  || ||||| ||||||||||||||  || || ||||||||||||||    
T  44252739 atttgggacgggtttgggtatgggttcggggtgggtacct---atata--cctgttacacgtcccatacccgtgtttcgagatcggggaaaaccc 44252828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 49025720 - 49025761
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||||||  ||||| ||||||||||||||    
T  49025720 gttacccgtcccatacccgtgttttgagatcggggaaaaccc 49025761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 43582616 - 43582656
Alignment:
Q  273 cgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  43582616 cgttacccgtctcatacccgtgttttgaaatcggggaaaac 43582656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 33384 - 33474
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||| ||||||||| ||||||||||||||||||||||| ||   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  33384 cattcgggacgagtttgggtatgggttcggggtgggtacat---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 33474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 5863481 - 5863390
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||| ||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  5863481 acatttgggacgggtttgggtatgggttcgaggtgggtatct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 5863390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 27738762 - 27738853
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || ||||||||||||||||||||||| ||   ||||| |   ||||||||||||||||||||  ||||||||||||||||||||    
T  27738762 acatttgggacgggtttgggtatgggttcggggtgggtacat---atatatct--gttacccgtcccatacccgtgttttgaaatcggggaaaaccc 27738853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 32532530 - 32532621
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||| ||||||||||||||||||||  |   |||||  ||| |||||||||||||||||||  ||||||||||||||||||||    
T  32532530 acatttgggacgggtatgagtatgggttcggggtgggtacct---atata--cccattacccgtcccatacccgtgttttgaaatcggggaaaaccc 32532621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 32853834 - 32853925
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  32853834 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 32853925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 2367317 - 2367407
Alignment:
Q  220 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  2367317 catttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 2367407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 3484021 - 3483930
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||| ||||||||||||  || || ||||||||||||||    
T  3484021 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccatcccatacccgtgtttcgagatcggggaaaaccc 3483930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 32053078 - 32053169
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||| ||||| || |||||||||||| |||||||||| ||   |||||  |||||||||||||||||| || |  ||||||||||||||||||||    
T  32053078 acattttggacgggtttgggtatgggtttggggtgggtacat---atata--cccgttacccgtcccatatccatgttttgaaatcggggaaaaccc 32053169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 3483903 - 3483833
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||| ||| | |||| |||||||||||||||    
T  3483903 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccatgagtatgggttttgttgccatgccta 3483833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 14410946 - 14410864
Alignment:
Q  226 ggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    ||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||| ||||||||    
T  14410946 ggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatctgggaaaac 14410864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 10188060 - 10187991
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcct 373  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| ||||||||||||||    
T  10188060 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcct 10187991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 18908933 - 18908974
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  18908933 gttacccgtcccatatccgtattttgaaatcggggaaaaccc 18908974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 29199972 - 29199895
Alignment:
Q  230 gagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    |||| ||||||||||||||||||    |||| | ||||| ||| |||||||||||| |||||||| |||||||||||||||||    
T  29199972 gagtttgggtatgggttcggggt----agat-acatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaa 29199895  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 20611033 - 20610993
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaa 311  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  20611033 cccgttacccgtcccctacccgtattttgaaatcggggaaa 20610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 28079778 - 28079703
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  |     ||| |||||||||||||||| ||||| |  ||||||||||||||||||||    
T  28079778 tgggtatgggttcggggtgggtacct-----atatccccgttacccgtcccgtacccatgttttgaaatcggggaaaaccc 28079703  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 30986290 - 30986334
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  30986290 cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 30986334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 10142616 - 10142525
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||  || |||||||| ||||||||||||||  |   |||||  ||||||||| |||||||||||||  ||||| ||||||||||||||    
T  10142616 acatttgggacaggtttgggtatgagttcggggtgggtacct---atata--cccgttacctgtcccatacccgttttttgagatcggggaaaaccc 10142525  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 12141375 - 12141466
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  ||||| |||||||||||| ||||  ||||| || |||||||||||    
T  12141375 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgtcacccgtcccatatccgtgttttgagattggggaaaaccc 12141466  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 20349095 - 20349142
Alignment:
Q  265 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    |||| ||||||||| ||||||||||||||  |||||||||||||||||    
T  20349095 tatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaa 20349142  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 30986361 - 30986432
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    ||||||||||||||||||||| | | |||  ||||||||| ||||| | | |||| ||||||||||||||||    
T  30986361 cggggaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 30986432  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 31496542 - 31496612
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||| | | ||| ||| |||||| ||||| | | |||| |||||||||||||||    
T  31496542 cggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31496612  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 31501928 - 31501998
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||| | | ||| ||| |||||| ||||| | | |||| |||||||||||||||    
T  31501928 cggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31501998  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 14506126 - 14506167
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  14506126 gttacccgtcccatacctgtgttttgaaatcggggaaaaccc 14506167  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 9442467 - 9442503
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggg 307  Q
    |||||||||||||||||||||||  ||||||||||||    
T  9442467 cccgttacccgtcccatacccgtgttttgaaatcggg 9442503  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 4583109 - 4583200
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||||||||||||| |||||||| |  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  4583109 acatttgggacgggtatgggtatgggtttggggtgggaacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 4583200  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 4920816 - 4920907
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| || |||||||||||||||||||| ||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  4920816 acatttgggacgggtttgggtatgggttcggggtggatacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 4920907  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 10822518 - 10822447
Alignment:
Q  305 ggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaag 376  Q
    |||||||||||||||||| | | ||||| |||||||||||||| | |||| ||||||||||||||| |||||    
T  10822518 ggggaaaacccgtcaaatcgaggtgggtttgggcgggtacccatggggacaggtattgttgccatgtctaag 10822447  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 10822608 - 10822534
Alignment:
Q  236 gggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||||||||||||| ||     ||||||||||||||||||| ||||||||  ||||||||||| ||||||||    
T  10822608 gggtatgggttcggggtgggtacat-----ataaccccgttacccgtcctatacccgtgttttgaaatcggagaaaaccc 10822534  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 15890197 - 15890287
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| ||||||||||||||||||| ||||||  |   |||||  |||||||||||||||||||||||  ||||||||||| ||||||||    
T  15890197 acatttgggacgggtatgggtatgggttcggg-tgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggagaaaaccc 15890287  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 17853391 - 17853301
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    |||||||||||| |||||||||||||||||| |||||||  |   ||||| ||  ||||||||||||||||||||  ||||||||||||||||||||    
T  17853391 acatttgggacgggtatgggtatgggttcggagtgggtatct---atatatcc--gttacccgtcccatacccgt-gtttgaaatcggggaaaaccc 17853301  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 2681320 - 2681394
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||||||||| | | ||| ||| |||||||||| | | ||| || |||||||||||||||    
T  2681320 aaatcggggaaaacccgtcaaattgaggttggtttggacgggtacccatgggcacgagttttgttgccatgccta 2681394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 10822685 - 10822647
Alignment:
Q  163 atgatctagggttgtgtttctatttatataaaaaggggt 201  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10822685 atgatctaaggttgtgtttctatttatataaaaaggggt 10822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 12866650 - 12866561
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 313  Q
    |||||||||||| ||||||||||||||||| ||||||||  |   |||||  || |||||||||||||||||| |  ||||||||||| ||||||    
T  12866650 acatttgggacgggtatgggtatgggttcgcggtgggtacct---atata--cctgttacccgtcccatacccatgttttgaaatcggagaaaac 12866561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 23045072 - 23045000
Alignment:
Q  237 ggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    ||||||||||||||||||||| ||     ||| | ||||||||| |||| |||||||| |||||||||||||||||||    
T  23045072 ggtatgggttcggggtgggtacat-----atatctccgttacccatcccgtacccgtattttgaaatcggggaaaacc 23045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 28569104 - 28569032
Alignment:
Q  235 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    |||||||||||||||||||||||  |     ||| |||||||||||||||| |||||| | |||||||||||||||||    
T  28569104 tgggtatgggttcggggtgggtacct-----atatccccgttacccgtcccgtacccgcattttgaaatcggggaaaa 28569032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 22695000 - 22694913
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaa 311  Q
    |||||||||||| || |||||||||||||||||||||||  |    ||||  |||||||  ||||||||||||||| ||||| ||||||||||    
T  22695000 acatttgggacgggtttgggtatgggttcggggtgggtacct---ctata--cccgttagtcgtcccatacccgtattttgagatcggggaaa 22694913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 1218745 - 1218783
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  1218745 acatttgggacgggtatgggtatgggttcggagtgggta 1218783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 4920938 - 4921004
Alignment:
Q  308 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  4920938 gaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 4921004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 10127071 - 10127109
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||||||||||| || |||||||||||||||||||||||    
T  10127071 acatttgggacgggtttgggtatgggttcggggtgggta 10127109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 12834673 - 12834635
Alignment:
Q  219 acatttgggacgagtatgggtatgggttcggggtgggta 257  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  12834673 acatttgggacgggtatgggtatgggttcggggtaggta 12834635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 23044976 - 23044898
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaagaa 378  Q
    |||| ||| |||||||||||||| ||| | ||| |||||||||||||| | | |||| | || ||||||||||||||||    
T  23044976 aaattgggaaaaacccgtcaaatcggggttggtttgggcgggtacccatgtgcacggatttttttgccatgcctaagaa 23044898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 27302784 - 27302714
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaa-cccgtcaaattgggatgggtatgggcgggta 343  Q
    |||| ||||| |||| ||||  ||||||||||||||||| |||||||||||||||| ||| ||| ||||||    
T  27302784 gttatccgtctcatatccgtgttttgaaatcggggaaaatcccgtcaaattgggattggtttggacgggta 27302714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 33727982 - 33727912
Alignment:
Q  304 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||| ||||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  33727982 cggggaaaatccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 33727912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 33728053 - 33728012
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaa 312  Q
    |||||||||||||||||||||||  ||||| |||||||||||    
T  33728053 cccgttacccgtcccatacccgtgttttgagatcggggaaaa 33728012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 38006518 - 38006477
Alignment:
Q  274 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||| ||||||||||||||| |||||||| |||||||||||    
T  38006518 gttacgcgtcccatacccgtattttgaaattggggaaaaccc 38006477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 18451921 - 18451833
Alignment:
Q  287 tacccgtactttgaaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 375  Q
    |||| ||| ||| |||||||||||||||||||||| |||| | |||  || |||| ||||||| | | |||| |||||| |||||||||    
T  18451921 tacctgtattttcaaatcggggaaaacccgtcaaactgggtttggttcggacgggaacccacgtgtatgggttttgttgtcatgcctaa 18451833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 67853 - 67927
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||| ||||||| ||| | ||| ||||||||||| || | | |||||| |||||||||||||||    
T  67853 aaatcggggaaaacctgtcaaatcggggttggtttgggcgggtactcatgggcacgggttttgttgccatgccta 67927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 75696 - 75770
Alignment:
Q  300 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 374  Q
    ||||||||||||||| ||||||| ||| | ||| ||||||||||| || | | |||||| |||||||||||||||    
T  75696 aaatcggggaaaacctgtcaaatcggggttggtttgggcgggtactcatgggcacgggttttgttgccatgccta 75770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 4638 - 4589
Alignment:
Q  265 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 314  Q
    |||| ||| |||||| |||||||||||||| |||||||| ||||||||||    
T  4638 tatatccctgttacctgtcccatacccgtattttgaaattggggaaaacc 4589  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 90634 - 90678
Alignment:
Q  271 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 315  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||    
T  90634 cccgttaaccgtctcatacccgtgttttgaaatcggggaaaaccc 90678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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