View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6149_low_5 (Length: 497)

Name: NF6149_low_5
Description: NF6149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6149_low_5
NF6149_low_5
[»] chr5 (14 HSPs)
chr5 (1-480)||(41366480-41366960)
chr5 (2-187)||(41324390-41324578)
chr5 (2-187)||(41316321-41316509)
chr5 (2-182)||(41328288-41328471)
chr5 (2-182)||(41332301-41332484)
chr5 (2-187)||(41310581-41310769)
chr5 (15-181)||(41337243-41337412)
chr5 (1-119)||(31188453-31188571)
chr5 (1-119)||(31225242-31225360)
chr5 (422-478)||(41324813-41324869)
chr5 (422-478)||(41328790-41328846)
chr5 (366-449)||(41316693-41316776)
chr5 (9-119)||(31178408-31178518)
chr5 (422-476)||(41332723-41332777)
[»] chr4 (1 HSPs)
chr4 (2-187)||(17249070-17249258)


Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 41366480 - 41366960
Alignment:
Q  1 tgaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41366480 tgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagat 41366579  T
Q  101 gttcttctcaagattcaacgtgtaaatcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaaatcgaatatgtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366580 gttcttctcaagattcaacgtgtaaatcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaaatcgaatatgtta 41366679  T
Q  201 acacatttattttcacaatttaaaggatagttcataatttttcatttgcttaaaagtaaaatttccagtatagtaatttggagggaacatcaaattaata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366680 acacatttattttcacaatttaaaggatagttcataatttttcatttgtttaaaagtaaaatttccagtatagtaatttggagggaacatcaaattaata 41366779  T
Q  301 a-cannnnnnnnngttgagcttgtatagaagaaattcattttggtttgatattagacaaggctaccgttaatccatttgcaggacatgtttgttggtggc 399  Q
    |            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366780 attttttttttttgttgagtttgtatagaagaaattcattttggtttgatattagacaaggctaccgttaatccatttgcaggacatgtttgttggtggc 41366879  T
Q  400 actcaatcatcttcggaagctatgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagtt 480  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366880 actcaatcatcttctgaagctgtgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagtt 41366960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 41324390 - 41324578
Alignment:
Q  2 gaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 101  Q
    ||||||||||| | ||||| |||||||||||||||||  || ||||| ||||||||||| | ||||||| ||| | | ||  | ||  ||||||||||||    
T  41324390 gaaaaacttcacaaagagattgatatgatattgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatg 41324489  T
Q  102 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 187  Q
    ||||||||||||||||||  | ||   |||||||||||||||| || ||||| ||||||||||| ||  ||||||||||||||||||||    
T  41324490 ttcttctcaagattcaacaggaaaattatcactcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 41316321 - 41316509
Alignment:
Q  2 gaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 101  Q
    ||||||||||| | ||||  |||||||| ||||||||  |||||||| ||||||||||| | ||||||| |||   | ||  |||| |||||||||||||    
T  41316321 gaaaaacttcacaaagagcttgatatgacattgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatg 41316420  T
Q  102 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 187  Q
    ||||||||||||||||||  | ||   |||||||||||||||| || || || ||||||||||||||  ||||||||||||||| ||||    
T  41316421 ttcttctcaagattcaacaggaaaattatcactcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaa 41316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 41328288 - 41328471
Alignment:
Q  2 gaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 101  Q
    ||||||||||||| ||||| ||||||||||   ||||  |||||||| ||||||| ||||| ||||||| ||||  | ||  |||| |||||||||||||    
T  41328288 gaaaaacttcatacagagattgatatgatagcacaagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatg 41328387  T
Q  102 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtc 182  Q
    ||||||||||||||||||  | ||   |||||||| ||||||| || ||||| |||||||| |||||  |||||||||||||||    
T  41328388 ttcttctcaagattcaacaggaaaattatcactcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtc 41328471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 41332301 - 41332484
Alignment:
Q  2 gaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 101  Q
    |||||| |||||||||||  |||||||||| ||||||  |||||||| ||||||| ||| | ||||||| ||||  | ||  |||| |||||||||||||    
T  41332301 gaaaaaattcatagagagcttgatatgataatgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatg 41332400  T
Q  102 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtc 182  Q
    ||||||||||||||||||  | ||   || ||||| ||||||| || ||||| |||||||| |||||  |||||||||||||||    
T  41332401 ttcttctcaagattcaacaggaaaattattactcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtc 41332484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 41310581 - 41310769
Alignment:
Q  2 gaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 101  Q
    |||||| |||| | ||||| | |||||||||||||||  |||||||| ||||||||||| | || |||| ||| | | ||  |||| |||||||||||||    
T  41310581 gaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatg 41310680  T
Q  102 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 187  Q
    |||||||||||||| |||  | ||   |||||||| ||||||| || || || |||||||| |||||  |||||||||| |||| ||||    
T  41310681 ttcttctcaagattaaacaggaaaattatcactcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 41337243 - 41337412
Alignment:
Q  15 gagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctcaagat 114  Q
    |||||| ||||| |||||||||||  |||||| ||||||| | ||  | |||||  ||| |  | ||| |||| || ||||| ||||||||||||||| |    
T  41337243 gagagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggt 41337342  T
Q  115 tcaacgtgtaaat---cactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagt 181  Q
    ||||| || ||||   ||||||||||| |||||||| || || ||||||||||| ||||| |||||||||    
T  41337343 tcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcattcaggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 31188571 - 31188453
Alignment:
Q  1 tgaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagat 100  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||||| |||||| ||||  | ||||||| |||   | ||| |||| |||||||| |||    
T  31188571 tgaaaagcttcataaagagattgatatgatattgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgat 31188472  T
Q  101 gttcttctcaagattcaac 119  Q
      |||||||||||||||||    
T  31188471 actcttctcaagattcaac 31188453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 31225242 - 31225360
Alignment:
Q  1 tgaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagat 100  Q
    |||||| ||||||| ||||| |||||||||||||||||  |||||||||||||| ||||  | ||||||| |||   | ||| |||| |||||||| |||    
T  31225242 tgaaaagcttcataaagagattgatatgatattgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgat 31225341  T
Q  101 gttcttctcaagattcaac 119  Q
      |||||||||||| ||||    
T  31225342 actcttctcaagatacaac 31225360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 41324813 - 41324869
Alignment:
Q  422 tgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaag 478  Q
    |||||||| |||| |||||||||||||||||||| | ||| ||||||| ||||||||    
T  41324813 tgttatgggcgatatctgagatggtaaagaatccaaaggtgatggaagaagcacaag 41324869  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 41328790 - 41328846
Alignment:
Q  422 tgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaag 478  Q
    |||||||| |||||||||||||||| ||||| || | ||||||||||| ||||||||    
T  41328790 tgttatgggcgatgtctgagatggtgaagaacccaaaggtaatggaagaagcacaag 41328846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 41316693 - 41316776
Alignment:
Q  366 gttaatccatttgcaggacatgtttgttggtggcactcaatcatcttcggaagctatgttatggacgatgtctgagatggtaaa 449  Q
    |||||||||||||||||||||||||| || ||| ||| || |||| || || ||| || | ||| ||||||||| |||||||||    
T  41316693 gttaatccatttgcaggacatgtttggtgctggtactgaaacatcgtcagaggctgtgatttgggcgatgtctgcgatggtaaa 41316776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 31178518 - 31178408
Alignment:
Q  9 ttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttct 108  Q
    |||||| ||||| |||||||||||||||||  ||| |||||||||| ||||  | ||||||| |||   | ||| |||| |||||||| ||||  ||| |    
T  31178518 ttcataaagagattgatatgatattgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttat 31178419  T
Q  109 caagattcaac 119  Q
    |||||||||||    
T  31178418 caagattcaac 31178408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 41332723 - 41332777
Alignment:
Q  422 tgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcaca 476  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||| ||||||    
T  41332723 tgttatgggcgatgtctgagatggtaaagaacccaaaggtattggaagaagcaca 41332777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 17249258 - 17249070
Alignment:
Q  2 gaaaaacttcatagagagactgatatgatattgcaagggatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 101  Q
    |||||||||||||| || | |||||||||||||||||  ||||| |||||||||| || | | || || |||||  | ||| |||| |||||||| ||||    
T  17249258 gaaaaacttcatagggaaattgatatgatattgcaagatatcatagatgatcacagaaatggacaaaacaaagcacgcaaggatgaagatctagttgatg 17249159  T
Q  102 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 187  Q
     |||| ||||||||||||  | ||   || || ||||| || | ||||| || ||||||||||||||  ||||||||||||||| ||||    
T  17249158 ctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatccaggttagtctacaa 17249070  T

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