View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6150_low_2 (Length: 399)
Name: NF6150_low_2
Description: NF6150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6150_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 36828249 - 36828621
Alignment:
| Q |
18 |
tgaacttgatgaaagttttggtttgcttttgtcaaacagatttgatgtgaaagggtatgtagctggatttggaaatcctgattgggcaaggactcatcag |
117 |
Q |
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| T |
36828249 |
tgaacttgatgaaagttttggtttgcttttgtcaaacagatttgatgtgaaagggtatgtagctggatttggaaatcctgattgggcaaggactcatcag |
36828348 |
T |
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| Q |
118 |
gctgctacttctactgctccaacagttttggctatcctgagtgcaggtgccacttgtgttggtaaaactgtcatggatgaaatggcttacaggttcggnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36828349 |
gctgctacttctactgctccaacagttttggctatcctgagtgcaggtgccacttgtgttggtaaaactgtcatggatgaaatggcttacaggttcggtt |
36828448 |
T |
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| Q |
218 |
nnnnnnnnnnctgttggtcaattttttcactcagcctaaagaatggtcaagttttatagtctttctttaagcattgttatataannnnnnnnnnnnatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36828449 |
ttttctttttctgttggtcaattttttcactcagcctaaagaatggtcaagttttatagtctttctttaagcattgttatataattttttatttttatta |
36828548 |
T |
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| Q |
318 |
ctgagcattattttcatgttgtaaaggacagcttttatctctaaatgacatttaatgtaaaacaaatgatgat |
390 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36828549 |
ctgagcattatcttcatgttgtaaaggacagcttttatctctaaatgacatttaatgtaaaacaaatgatgat |
36828621 |
T |
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