View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6151_low_1 (Length: 380)
Name: NF6151_low_1
Description: NF6151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6151_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 44973669 - 44973964
Alignment:
| Q |
11 |
atgaaataaagtttgatatactggtaattaatgcaggctatactgctcatgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973669 |
atgaaataaagtttgatatactggtaattaatgcaggctatactgctcatgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggc |
44973768 |
T |
|
| Q |
111 |
tcctgaatactgtttcaatcagactgagaatatgttagaatctgctactgttcgtggcgattcttttggaagtctgatgagaggcaaagtcgannnnnnn |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973769 |
tcctgaatactgtttcaatcagactgagaatatgttagaatctgctactgttcgtggcgattcttttggaagtctgatgagaggcaaagtcga------- |
44973861 |
T |
|
| Q |
211 |
nnnnnnnnnnnnnnataggatttgttaattatgaaatggttcaaactgtatatgactaatgtatttccgaatgattgtttagtttagctaaatattaaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973862 |
--tgctgctgctgcataggatttgttaattatgaaatggttcaaactgtatatgactaatgtatttccgaatgattgtttagtttagctaaatattaaca |
44973959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 44975363 - 44975453
Alignment:
| Q |
49 |
tatactgctcatgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggctcctgaatactgtttcaatcagactgaga |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
44975363 |
tatactgctcatgtgatgacatttgaggttggagcagtgcttgaggatccgcattggcaggctcctatatactgcttcaatcagactgaga |
44975453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 40087365 - 40087426
Alignment:
| Q |
54 |
tgctcatgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggctcctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||| ||| ||||||||||||| |
|
|
| T |
40087365 |
tgctcatgtgatgacatttgaggttggtgcagtgctggatgatgagcattggcaggctcctg |
40087426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 40078048 - 40078127
Alignment:
| Q |
59 |
atgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggctcctgaatactgtttcaatcagactgag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||| || |||||||||||||| || ||||| ||| || ||||| |
|
|
| T |
40078048 |
atgtgatgacatttgaggttggagcagttctggatgatgctcattggcaggctcctgactattgttttaataaggctgag |
40078127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 40082166 - 40082235
Alignment:
| Q |
56 |
ctcatgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggctcctgaatactgttt |
125 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || || ||||| || ||||||||||||| |||||||| |
|
|
| T |
40082166 |
ctcatgtaatgacatttgaggttggagcagttctggatgatgcccattggcaggctcctgtctactgttt |
40082235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University