View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6151_low_2 (Length: 351)
Name: NF6151_low_2
Description: NF6151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6151_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 34317676 - 34317351
Alignment:
| Q |
21 |
agcagttgcaactgcctatgaacagtgccacattacaatctatatatgcaacaagaccaaattgaagaaacaaacatcagtaccttaatatattagaaat |
120 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
34317676 |
agcagttgcaactgcctatgaacaatgccacattacaatctatatatgcaacaagaccaaattgaagaaataaacatcagtaccttaatatactagaaat |
34317577 |
T |
|
| Q |
121 |
gaggctacaacaattcaacatgttactagtacnnnnnnncttgattgttcttgctggtagttttccaaccaaagcaaaaggtccagtgccatcttccatg |
220 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34317576 |
gaggctacaacaactcaacatgttactagtactttttttcttgattgttcttgctggtagttttccaaccaaagcaaaaggtccagtgccaccttccatg |
34317477 |
T |
|
| Q |
221 |
gattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtcatggaagaaatcccctttggagtagagaaagaccaatcagtagattgga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34317476 |
gattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtcatggaagaaatcccctttggagttgagaaagaccaatcagtagattgga |
34317377 |
T |
|
| Q |
321 |
aggaaacttcagatgaacatgttata |
346 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
34317376 |
aggaaacttcagatgaacatgttata |
34317351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 76 - 346
Target Start/End: Original strand, 34314117 - 34314402
Alignment:
| Q |
76 |
accaaattgaagaaacaaacatcagtaccttaatatattagaaatgaggctacaacaattcaacatgttactagtacnnnnnnncttgattgttcttgct |
175 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||| || |
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| T |
34314117 |
accaaattgaacaaacaaacatcaccaccttaatatactagaaatgaggctacaacaactcaacatgttactagtaccatttttcttgcttgttcttact |
34314216 |
T |
|
| Q |
176 |
ggtagttttccaaccaaagcaaaaggtccagtgccatcttccatggattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtcatgg |
275 |
Q |
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||| ||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
34314217 |
ggtggttttcctaccaaagcaaaaggtttgctaccaccttccatggattctcccaatcctctcttagctgatcatttcccagaccgattttgcgtcacgg |
34314316 |
T |
|
| Q |
276 |
aagaaatcccctttggagtagagaaagaccaatcag---------------tagattggaaggaaacttcagatgaacatgttata |
346 |
Q |
| |
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|| ||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34314317 |
aacaaatcccctatggagttgagatagaccaatcagccatgacatctatagtagattggaaggaaacttcagatgaacatgttata |
34314402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 34314048 - 34314352
Alignment:
| Q |
24 |
agttgcaactgcctatgaacagtgccacattacaatctatatatgcaacaag-----------------accaaattgaagaaacaaacatcagtacctt |
106 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
34314048 |
agttgcaacttcctatgaaccatgccacattacaacctatatatgcaacaagaccaccaattctgttccaccaaattgaacaaacaaacatcaccacctt |
34314147 |
T |
|
| Q |
107 |
aatatattagaaatgaggctacaacaattcaacatgttactagtacnnnnnnncttgattgttcttgctggtagttttccaaccaaagcaaaaggtccag |
206 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||||||| |
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| T |
34314148 |
aatatactagaaatgaggctacaacaactcaacatgttactagtaccatttttcttgcttgttcttactggtggttttcctaccaaagcaaaaggtttgc |
34314247 |
T |
|
| Q |
207 |
tgccatcttccatggattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtcatggaagaaatcccctttggagtagagaaagacca |
306 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| |||||| |||| |||||| |
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| T |
34314248 |
taccaccttccatggattctcccaatcctctcttagctgatcatttcccagaccgattttgcgtcacggaacaaatcccctatggagttgagatagacca |
34314347 |
T |
|
| Q |
307 |
atcag |
311 |
Q |
| |
|
||||| |
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|
| T |
34314348 |
atcag |
34314352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 34305172 - 34304895
Alignment:
| Q |
21 |
agcagttgcaactgcctatgaacagtgccacattacaatctatatatgcaacaagaccaaattgaagaaacaaacatcagtaccttaatatattagaaat |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34305172 |
agcagttgcaactgcctatgaacaatgccacattacaacctatatatgcaacaagaccaaattgaagaaacaaacatcagtaccttaatatactagaaat |
34305073 |
T |
|
| Q |
121 |
gaggctacaacaattcaacatgttactagtacnnnnnnncttgattgttcttgctggtagttttccaaccaaagcaaaaggtccagtgccatcttccatg |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |||||||| ||||| |||||| | |||||| || | | |||||| |
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| T |
34305072 |
gaggctacaacaactcaacatgttactagtaccatttttcttgcttgttcttactggt---------accaaaaccaaaggttcaccaataccatccatg |
34304982 |
T |
|
| Q |
221 |
gattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtcatggaagaaatcccctttggagtagagaaagaccaa |
307 |
Q |
| |
|
||||| |||| ||||||||| | |||||||||||||| | || |||||||||| || ||| | |||||||||| |||||||||||| |
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| T |
34304981 |
gattcccccatccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaa |
34304895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 311
Target Start/End: Original strand, 33425955 - 33426180
Alignment:
| Q |
76 |
accaaattgaagaaacaaacatcagtaccttaatatattagaaatgaggctacaacaattcaacatgttactagtacnnnnnnncttgattgttcttgct |
175 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||| ||| |||||||| |
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| T |
33425955 |
accaaattgaataaacaatcatcagtaccttaatatactagaaataaggctacaacaactcaacatgttaccagtacc----------atttttcttgct |
33426044 |
T |
|
| Q |
176 |
ggtagttttccaaccaaagcaaaagg---tccagtgccatcttccatggattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtca |
272 |
Q |
| |
|
|||||||||| |||||||| ||||| || ||||| ||||||||||| || || |||||||||||||||||||||||||||| || ||| |||| |
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|
| T |
33426045 |
tgtagttttcctaccaaagccaaaggattagcaatgcca---tccatggattccccaaaccctctcttagctgatcatttcccagacccattttgtgtca |
33426141 |
T |
|
| Q |
273 |
tggaagaaatcccctttggagtagagaaagaccaatcag |
311 |
Q |
| |
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||||| ||| | ||||||||| |||||||||||||||| |
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| T |
33426142 |
tggaacaaacctactttggagttgagaaagaccaatcag |
33426180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 311
Target Start/End: Complemental strand, 25651758 - 25651519
Alignment:
| Q |
76 |
accaaattgaagaaacaaacatcagtaccttaatatattagaaatgaggctacaacaattcaacatgttactag----tacnnnnnnncttgattgttct |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||| |||||| |
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| T |
25651758 |
accaaattgaataaacaaacatcagtaccttaatatactagaaatgtggctacaacaactcaacatgttactagctagtaccatttttcttgtgtgttct |
25651659 |
T |
|
| Q |
172 |
tgctggtagttttccaaccaaagcaaaaggtccagtgccatcttccatggattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtc |
271 |
Q |
| |
|
||||||||||||||| |||| | | |||||| || | | |||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||| |
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|
| T |
25651658 |
tgctggtagttttcctaccagaaccaaaggttcactattaccttccatggattctcccaatcctctcttagctgatcatttcccaaacccattttgggtc |
25651559 |
T |
|
| Q |
272 |
atggaagaaatcccctttggagtagagaaagaccaatcag |
311 |
Q |
| |
|
|||| ||| |||||||||| | |||||||||||||||| |
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|
| T |
25651558 |
gcggaacaaaccccctttggaattgagaaagaccaatcag |
25651519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 25651505 - 25651469
Alignment:
| Q |
310 |
agtagattggaaggaaacttcagatgaacatgttata |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25651505 |
agtagattggaaggaaacttcagatgaacatgttata |
25651469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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