View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6152_high_4 (Length: 438)
Name: NF6152_high_4
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 178 - 421
Target Start/End: Original strand, 41742607 - 41742850
Alignment:
| Q |
178 |
acactaaaatatttctcagtttatcatcgaaaaacctcaattttcacaaccatgaggcttcatgcctaacccaagcaagaacatttttagacaactattc |
277 |
Q |
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| T |
41742607 |
acactaaaatacttgtcagtttatcatcgaaaaacctcaattttcacaaccatgaggcttcatgcctaacccaagcaagaacatttttagacaactattc |
41742706 |
T |
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| Q |
278 |
aaatataacgcttccttttaattaccatccatttgatattactgaataacttctagagcaaaaaggatgccccaaagttttgaagcttaaaattaaattt |
377 |
Q |
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| T |
41742707 |
aaatataacgcttccttttaattaccatccatttgatattactgaataacttctagagcaaaaaggatgacccaaagttttgaagcttaaaattaaattt |
41742806 |
T |
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| Q |
378 |
gatttaaaacaaatgattatgattgtttaaatcccctctctgtg |
421 |
Q |
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| T |
41742807 |
gatttaaaacaaatgattatgattgtttaaatcccctctctgtg |
41742850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 41742415 - 41742607
Alignment:
| Q |
18 |
gtatacactgcactattcctttaccaagtttaatcccactatcatatgttgattaatattggtannnnnnn-aacatgctaaaaaccattctagtgatat |
116 |
Q |
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| T |
41742415 |
gtatacactgcactattcctttaccaagtttaatcccactatcatatgttgatcaatattggtattttttttaacatactaaaaaccattctagtgatat |
41742514 |
T |
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| Q |
117 |
tccttcaacaaaaactccttcctcagctaatgcaccaacatcttgatttgcttgcttatttacactaaaatatttctcagtttatcatcgaaa |
209 |
Q |
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| T |
41742515 |
tccttcaacaaaaactccttcctcagctaatgcaccaacatcttgatttgcttgcttatttacactaaaatatttctcagtttatcatcgaaa |
41742607 |
T |
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