View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6152_low_19 (Length: 211)
Name: NF6152_low_19
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 54345761 - 54345945
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54345761 |
taagtgggttcctaacaatggatcacttatgtctataggtaaccagacctacatggatataactctatcggttagggatgttcttagtccttctggagat |
54345860 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54345861 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
54345945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 27157339 - 27157155
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27157339 |
taagtgggttcctaacaatggatcacttatgtctataggtaaccaggcctacatggatacaactctatcggttagggatgttcttagtctttttggagat |
27157240 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
27157239 |
tgaaacattgatttcctcataagtaacttgctagttgacactgttaatcaaattcttgcgcttccgatccttaatgatgatgatg |
27157155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 23948724 - 23948908
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23948724 |
taagtgggttcctaacaatggatcacttatgtctataggtaaccagacctacatggatataactctatcggttagggatgttcttagtccttctggagat |
23948823 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23948824 |
tggaacattgatttcctcataaataacttgccaactaacactgttaatcaaattcttgcgctttcaatccctaatgatgatgatg |
23948908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 5307742 - 5307926
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
5307742 |
taagtgggttcctaacaatggatcacttatgtctataggtaaccagacctacatggatataactctattggttagggatgttcttagtccttctagagat |
5307841 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5307842 |
tggaacattgatttccgcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
5307926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 23722320 - 23722497
Alignment:
| Q |
28 |
gttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagattggaaca |
127 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
23722320 |
gttcctaacaatggatcacttatgtctataggtaaccagacctacatggatataactctatcggtaagggatgttcttagtccttctggagattggaaca |
23722419 |
T |
|
| Q |
128 |
ttgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23722420 |
ttgattttctcataaataacttgccagctgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
23722497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 50953711 - 50953531
Alignment:
| Q |
25 |
tgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagattgga |
124 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
50953711 |
tgggtttctaacaatggatcacttatgtctataggtaaccaggcctacatggatacaactctatcagttagggatgttcttagtccttttgaagattgga |
50953612 |
T |
|
| Q |
125 |
acattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50953611 |
acattaatttcctcataaataacttgacagctgacactgttaatcaaattcttgcgcttctgatccctaatgatgatgatg |
50953531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 8020916 - 8020732
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8020916 |
taagtgggttcctaacaatgaatcacttatgtctataggtaaccagacctacatggatataactctatcggttagggatgttcttagtccttctggagat |
8020817 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8020816 |
tggaacattgatttcctcataaataacttgccaactaacactgttaatcaaattcttgcgctttcaatccctaatgatgatgatg |
8020732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 25712495 - 25712670
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| || |||| ||||| || ||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
25712495 |
taagtgggttcctaacaatggagcacttatatctataggtaacgaggcctatgtggatacaattctattggttagggatgttcttaatccttctggagat |
25712594 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatg |
196 |
Q |
| |
|
||||||| ||||||||| || || ||||||||||| |||||||||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
25712595 |
tggaacactgatttccttatgaacaacttgccaacagacactgttagtcagattcttgtgcttccggtccctaatg |
25712670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 26617897 - 26617713
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
26617897 |
taagtgggttcctatcaattgatcacttatgtctataggtaaccaggcctacatggatacaactctatcggttagggatgttcttagtccttctagagat |
26617798 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26617797 |
tggaacattgatttcctcataaacaacttgccaactgacactgttaatcaaattcttgcgcttccgatccctaatgatgatgatg |
26617713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 34390977 - 34390793
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34390977 |
taagtgggttcttaacaatggatcacttatgtctataggtaaccaggcctacatggatacaactctatcggttagggatgttcttagtccttctggagat |
34390878 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
34390877 |
tggaacattgatttcctcataaataacttgccagctgacaccgttaatcaaattattacgcttccgatccctaatgatgatgatg |
34390793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 7306254 - 7306070
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7306254 |
taagtgggttcctaacaatggatcacttatgtctacaggtaaccaagcgtacatggatacaactctatcggttagggatgttcttagtccttctggagat |
7306155 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
7306154 |
tggaacattgatttcctcataaacaacttgtcagctgacactgttaatcaaattcttgcactttcgatccctaatgatgatgatg |
7306070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 40197558 - 40197375
Alignment:
| Q |
21 |
taagtgggttcctaacaatggaccacttatgtctataggtaaccagacctacatggatgtaactctatcggttagggatgttcttagtccttttggagat |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||| |||| || ||||||||||| |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40197558 |
taagtgggttcctaacaatggag-acttatatttatagataacgaggcctacatggatacaactatatcggttagggatgttcttagtccttctggagat |
40197460 |
T |
|
| Q |
121 |
tggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg |
205 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||| ||| ||||| |||||||||||||||| | |||||||||||||||||| |
|
|
| T |
40197459 |
tggaacattgatttccttatgaacaactttccaactaacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg |
40197375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University