View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6152_low_2 (Length: 573)
Name: NF6152_low_2
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Original strand, 25998954 - 25999489
Alignment:
| Q |
19 |
attattaaatatggtgcttcaatgaaacctttttgaatctttacaagattacaatttcaataaattttacttctgtttgtagcaaacagttctcattgac |
118 |
Q |
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| T |
25998954 |
attattaaatatggtgcttcaatgaaacctttttgaatctttacaagattacaatttcaataaattttacttctgtttgtagcaaacagttctcattgac |
25999053 |
T |
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| Q |
119 |
ttgttaaaactattctttcaaatttatgcttaaatgtttgcaatcaaaatcaactaaacagaaattggaatggtttctacagtttttatgaggagtgtaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25999054 |
ttgttaaaactattctttcaaatttatgcttaaatgtttgcaatcaaaatcaactaaacagaaattggaatggtttctacaatttttatgaggagtgtaa |
25999153 |
T |
|
| Q |
219 |
ccttgcaaatgataaaaatcactctgtccactatttctcattaatgctttatcttcctgtttattttacagattcatctgcctataannnnnnnnnattc |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
25999154 |
ccttgcaaatgataaaaatcactctgtccactttttcttattaatgctttatcttcctgtttattttacagattcacctgcctataa---ttttttattc |
25999250 |
T |
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| Q |
319 |
ccacttaatacgaaaatacataattaataagaaagaaagtgaacaaataatgcagaatatctgtaacttctaatgcacagattcttggttaccaccagtc |
418 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
25999251 |
ccactcaatacgaaaatacataattaataagaaagaaagtgaacaaataatgcagaatatctgtaacttctaatgcacaaattcttggttagcaccagtc |
25999350 |
T |
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| Q |
419 |
caaaatttgcttccgaaagtaatttaatgataagatcaagtgatactctagattaggctcttcccaggacaaaatcaatatcttatcttcaatgatttca |
518 |
Q |
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||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25999351 |
caaaatttgcttctgaaaataatttaatgatcagatcaagtcatactctagattaggctcttcacaggacaaaatcaatatcttatcttcaatgatttca |
25999450 |
T |
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| Q |
519 |
atattgtcatgatctgcgtgtgaaaacatagcaaattat |
557 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
25999451 |
atattgtcatgatctgcgtgtgaaaacatagcaaattat |
25999489 |
T |
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