View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6152_low_20 (Length: 204)
Name: NF6152_low_20
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 3128728 - 3128883
Alignment:
| Q |
20 |
aagaatatagaaagatgatagtacagtacagacatacgaggaagttgtcgagttgttgacgatcatgaggcgaaagagaatgagtttgttgagatatata |
119 |
Q |
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| T |
3128728 |
aagaatatagaaagatgatagtaaag-----acatacgaggaagttgtcgagttgttgacgatcatgaggcgaaagagaatgagtttgttgagagatata |
3128822 |
T |
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| Q |
120 |
agatcgtagaagatgatgagattgagataactgagcatcaatcaatggtaactgatctata |
180 |
Q |
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| T |
3128823 |
agatcgtagaagatgatgagattgagataactgagcatcaatcaatggtaactgatctata |
3128883 |
T |
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