View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6152_low_3 (Length: 469)
Name: NF6152_low_3
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 238 - 447
Target Start/End: Complemental strand, 27145746 - 27145540
Alignment:
| Q |
238 |
ttggactatttgatcataaaaagagacaagaagtgcaaaa-tagtaggtaaacactgtagcaaatcaaatatataccccaacgatcactttttataaacc |
336 |
Q |
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| T |
27145746 |
ttggactatttgatcataaaaagagacaagaagtgcaaaaatagtaggtaaacactgtagcaaatcaaatatataccccaaccatcactttttataaacc |
27145647 |
T |
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| Q |
337 |
ccatttttcacctaccgaaagggtgttattttattttttgtcttgctaacaagtttcctaaataagtcctcaaatttcattaactatatatttccatcat |
436 |
Q |
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| T |
27145646 |
ccatttttcacctaccgaaagggtgttattttattttttgtctcgctaacaagtttcctaaataagtcctcaaatttcattaac----tatttccatcat |
27145551 |
T |
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| Q |
437 |
tcaaatttttt |
447 |
Q |
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| T |
27145550 |
tcaaatttttt |
27145540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 27146000 - 27145787
Alignment:
| Q |
8 |
ccaagaatatcaatcttatgagtttaacaagtttcatcataaattagtttttcgtagctatatgattatagaaaaacactatacccacacaattgtgact |
107 |
Q |
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| T |
27146000 |
ccaagaaaatcaatcttatgagtttaacaagtttcatcataaattagtttttcgtacctatatgatta------------atacccacacaattgtgact |
27145913 |
T |
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| Q |
108 |
tgtattctttaatattttaatgtctttctttagttgataaagtttttaacgtgatttatatcttggtgtgggattgtacttaatagtcagtcaatgctac |
207 |
Q |
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| T |
27145912 |
tgtattctttaatattttcatgtctttctatagttgataaagtttttaacgtgatttatatcttggtgtgggattgtacttaatagtcagtcaatgctac |
27145813 |
T |
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| Q |
208 |
cactacaactgatgtactttcttgtg |
233 |
Q |
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| T |
27145812 |
cactacaactgatgtactttcttgtg |
27145787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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