View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6152_low_5 (Length: 424)
Name: NF6152_low_5
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 88 - 409
Target Start/End: Complemental strand, 32041692 - 32041371
Alignment:
| Q |
88 |
aatgttgggtgtggggtttggtgatgtcaatctccaaaagtgtctttcaagatgttgggtgtagtttttcttttggggggatattttgttcttgattaaa |
187 |
Q |
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| T |
32041692 |
aatgttgggtgtgggatttggtgatgtcaatctccaaaagtgtctttcaagatgttgggtgtagtttttcttttgggggaatattttgttcttgattaaa |
32041593 |
T |
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| Q |
188 |
ggttttagggttctcagtatttcaatatcttgatgtttgaatttcatttcattgttcttgaatttcatttcattccaaattatattaattaacctcttat |
287 |
Q |
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| T |
32041592 |
ggttttagggttctcagtatttcaatatcttgatgtttgaatttcatttcattgttcttgaatttcatttcatttcaaattgtattaattaaccttttat |
32041493 |
T |
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| Q |
288 |
ggatttcaaatgatttggggttgtaaaatctcaaaattaatttagagaatggagaagtttggggttcattttaattctaagtttactttgatatagtttt |
387 |
Q |
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| T |
32041492 |
ggatttcaaatgatttggggttgtaaaatctcaaaattaatttagagaatggagaagtttggggttaattctaattctaagtttactttgatatagtttt |
32041393 |
T |
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| Q |
388 |
tactttttatgggtttagatct |
409 |
Q |
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| T |
32041392 |
tattttttataggtttagatct |
32041371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 32041756 - 32041715
Alignment:
| Q |
23 |
aggtcttagggcatgtgagtggtagtagctacaaaataagtc |
64 |
Q |
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| T |
32041756 |
aggtcttagggcatgtgagtggtagtagctacaaaataagtc |
32041715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 32031125 - 32031089
Alignment:
| Q |
352 |
ttcattttaattctaagtttactttgatatagttttt |
388 |
Q |
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| T |
32031125 |
ttcattttaattctaagtttactttgatatagttttt |
32031089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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