View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6152_low_8 (Length: 292)
Name: NF6152_low_8
Description: NF6152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6152_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 33750973 - 33751248
Alignment:
| Q |
19 |
tctcagtggaggtgttgttaccattaagattcattttaatgagcttgagttaaggacaaattgtttggtagaacccgagtttgaatccggactataacaa |
118 |
Q |
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| T |
33750973 |
tctcagtggaggtgttgttaccattaagattcattttaatgagcttgagttaaggacaaattgtttggtagaacccgagtttgaatccggactataacaa |
33751072 |
T |
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| Q |
119 |
tctttagtca--ctttacttacttcgtagctaaactcaagattacgagagagtagagggttaagaccaaaataatgtaaacaaaggcggtatttaggtga |
216 |
Q |
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| T |
33751073 |
tctttagtcagactttacttacttcgtagctaaactcaagattacgagagagtagagggttaagaccaaaataatgtaaacaaaggcggtatttaggtga |
33751172 |
T |
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| Q |
217 |
agctagctataccaatgattgatgattgatgaatgtgtttcattttttaattttagcatctctcttttatgtttta |
292 |
Q |
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| T |
33751173 |
agctagctataccaatgattgatgattgatgaatttgtttcattttttaattgtagcatctctcttttatgtttta |
33751248 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 2999921 - 2999854
Alignment:
| Q |
53 |
tttaatgagcttgagttaaggacaaattgtttggtagaacccgagtttgaatccggactataacaatc |
120 |
Q |
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| T |
2999921 |
tttaatgagcttcagttaaggtctaattatttgggaaaacccgagtttgaattctgactagaacaatc |
2999854 |
T |
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