View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6153_high_1 (Length: 577)
Name: NF6153_high_1
Description: NF6153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6153_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 4608696 - 4609142
Alignment:
| Q |
1 |
acttcagattcttgcttgtgaagaagtagttatgggaaaagctagtagatggtttaagagtttgttaggaaacaagaagaaggagaaagagaaggaccac |
100 |
Q |
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| T |
4608696 |
acttcagattcttgcttgtgaagaagtagttatgggaaaagctagtagatggtttaagagtttgttaggaaacaagaagaaggagaaagagaaggaccac |
4608795 |
T |
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| Q |
101 |
agtgacattaattcaggttcattgacacctgacatcaaaaaggagaagagaagatggagttttgcaaaacaagggaagaatgttgaagtggaacctccta |
200 |
Q |
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| T |
4608796 |
agtgacatcaattcaggttcattgacacctgacatcaaaaaggagaagagaagatggagttttgcaaaacaagggaagaatgttgaagtggaacctccta |
4608895 |
T |
|
| Q |
201 |
acattactcctacttcatcttctgatggttcttggctcagatcctatattgctgatacagaaaatcaacagaacaaacatgcaattgctgttgcagctgc |
300 |
Q |
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| T |
4608896 |
acattactcctacttcatcttctgatggttcttggctcagatcctatattgctgatacagaaaatcaacagaacaaacatgcaattgctgttgcagctgc |
4608995 |
T |
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| Q |
301 |
tacggcggccgctgcggatgctgctgtggccgccgcgcaggctgccgtggcagttgtgaggttgacaagtcaaggtagaggtacattgttcagtggaagt |
400 |
Q |
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| T |
4608996 |
tacggcggccgctgctgatgctgctgtggccgccgcacaggctgccgtggcagttgtgaggctgacaagtcaaggtagaggtacattgttcagtggaagt |
4609095 |
T |
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| Q |
401 |
agagagaaatgggctgctgtaaagattcaaactttcttcagaggcta |
447 |
Q |
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| T |
4609096 |
agagagaaatgggctgctgtaaagattcaaactttcttcagaggcta |
4609142 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 43315632 - 43315591
Alignment:
| Q |
30 |
ttatgggaaaagctagtagatggtttaagagtttgttaggaa |
71 |
Q |
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| T |
43315632 |
ttatgggaaaagctagtagatggttgaagggtttgtttggaa |
43315591 |
T |
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