View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6153_high_2 (Length: 457)
Name: NF6153_high_2
Description: NF6153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6153_high_2 |
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| [»] scaffold0024 (2 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 440
Target Start/End: Original strand, 119376 - 119721
Alignment:
| Q |
87 |
attttagtttggattgaaagtgtaagacaccgaggctgttaataaatagcgggggaagagggtcaaaacattgtatcttctcggtttaaaacaaatggaa |
186 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
119376 |
atttttgtttggattgaaagtgtaagacaccgaggct------aaatagcgggggaagagggtcaaaacattgtatcttctcggtttaaaacaaatggaa |
119469 |
T |
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| Q |
187 |
atttatgtgaaaggaaggatataannnnnnnnnnnnnnnnnnnnnnnnnaaatatatactaaatggaaatacttacccacttccttataaactgtataaa |
286 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
119470 |
atttatgtgaaaggaaggatataattttttttaatgtttttatttttttaaatatatactaaatggaaatacttactcacttccttataaacagtataat |
119569 |
T |
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| Q |
287 |
aaatataggannnnnnnnnnnnnnnnataatattaacatgttgannnnnnncccaaatataatgagtaattattacaaatttaaatgagtattattcatt |
386 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||| || |
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| T |
119570 |
aaatatag--atttttttttttttttataatattaacatgttgatcttttttccaaatataatgagtaataattacaaatttaaattagtattgttcctt |
119667 |
T |
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| Q |
387 |
gtatataaactatgaaaaatataacgagatacaatagttgaaggatatcagatg |
440 |
Q |
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||||||||| |||||||||||||||||| |||||||||| |||| ||||||||| |
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| T |
119668 |
gtatataaagtatgaaaaatataacgaggtacaatagttaaagggtatcagatg |
119721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 119290 - 119339
Alignment:
| Q |
1 |
gcattgtttttcattgcggtgtcacaacataagcatttggataagtgagg |
50 |
Q |
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| T |
119290 |
gcattgttttttattgcagcgtcacaacataagcatttggataagtgagg |
119339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 22614857 - 22614734
Alignment:
| Q |
88 |
ttttagtttggattgaaagtgtaagacaccgaggctgttaataaatagcgggggaagagggtcaaaacattgtatcttctcggtttaaaac--aaat-gg |
184 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| || |
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| T |
22614857 |
ttttagtttggattgaaagtgtaagacatcgaggctattaataaatagcgggggaagaggatcaaaccattgtatcttcttaatttaaaacagaaatagg |
22614758 |
T |
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| Q |
185 |
aaatttatgtgaaaggaaggatat |
208 |
Q |
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||||||||| | |||||||||||| |
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| T |
22614757 |
aaatttatgaggaaggaaggatat |
22614734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 440
Target Start/End: Complemental strand, 22614608 - 22614505
Alignment:
| Q |
339 |
ccaaatataatgagtaattattacaaatttaaatgagtattattca--ttgtatataaactatgaaaaatataacgagatacaatagttgaaggatatca |
436 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | || | |||||| | ||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
22614608 |
ccaaatataatgagtaattattacaaatttaaattagtattgtccaatatatatatatagtatgaaaaatacaacgagatataatagttgaagggtatca |
22614509 |
T |
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| Q |
437 |
gatg |
440 |
Q |
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|||| |
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| T |
22614508 |
gatg |
22614505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22614917 - 22614869
Alignment:
| Q |
1 |
gcattgtttttcattgcggtgtcacaacataagcatttggataagtgag |
49 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
22614917 |
gcattgtttttgattgtggtgtcacaacataagcatttggataagtgag |
22614869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 22614706 - 22614651
Alignment:
| Q |
236 |
aaatatatactaaatggaaatactta-cccacttccttataaactgtataaaaaat |
290 |
Q |
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| T |
22614706 |
aaatatataataaatgaaaatacttaacccacttccttataatctgtataataaat |
22614651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 1775 - 1662
Alignment:
| Q |
94 |
tttggattgaaagtgtaagacaccgaggctgttaataaatagcgggggaagagggtcaaaacattgtatcttctcggtttaaaacaaatggaaatttatg |
193 |
Q |
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|||||||||||||||||| |||| ||||| ||||||| || | | |||||| | |||||| |||||||||||||||| |||||||||| |||||| | |
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| T |
1775 |
tttggattgaaagtgtaacacactaaggctattaataagtaacaagt-aagaggattaaaacaatgtatcttctcggtttgaaacaaatggtaatttacg |
1677 |
T |
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| Q |
194 |
tgaaaggaaggatat |
208 |
Q |
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|| |||||||||||| |
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| T |
1676 |
tggaaggaaggatat |
1662 |
T |
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