View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6153_high_5 (Length: 220)
Name: NF6153_high_5
Description: NF6153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6153_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 3613740 - 3613925
Alignment:
| Q |
18 |
catggacaagagcctatgtggtaggttctggtattatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaaga |
117 |
Q |
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| T |
3613740 |
catggacaagagcctatggggtaggttctggtattatgcctcatccaacttcaagaaccttgaaagagtattgttggacggattcttttgcaaatcaaga |
3613839 |
T |
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| Q |
118 |
gaatgttagggcttgtttagcttggaagaaagagacatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgt |
203 |
Q |
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| T |
3613840 |
gaatgttagggcttgtttagcttgggagaaagagacatgttctggaaaaccgatgaacgtgatttgcttgaatgttatcggtctgt |
3613925 |
T |
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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 14757563 - 14757748
Alignment:
| Q |
18 |
catggacaagagcctatgtggtaggttctggtattatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaaga |
117 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||| ||||| || ||||| |
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| T |
14757563 |
catggacaagagcttatggggtaggttgtggtattatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaaga |
14757662 |
T |
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| Q |
118 |
gaatgttagggcttgtttagcttggaagaaagagacatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgt |
203 |
Q |
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||||||||||||||||||||||||| |||| |||| ||||| ||||| | || |||| |||||||||||||| |||| ||||||| |
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| T |
14757663 |
gaatgttagggcttgtttagcttgggagaaggagatgtgttccggaaagccgacgaacatgatttgcttgaatattattggtctgt |
14757748 |
T |
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