View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6153_high_6 (Length: 219)
Name: NF6153_high_6
Description: NF6153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6153_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 21243191 - 21242997
Alignment:
| Q |
5 |
gaggagcagcac-agacccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaaccca |
103 |
Q |
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| T |
21243191 |
gaggagcagcaccagacccaatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaaccca |
21243092 |
T |
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| Q |
104 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtg |
198 |
Q |
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| T |
21243091 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtg |
21242997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 21258939 - 21258765
Alignment:
| Q |
21 |
ccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttat |
120 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||| | |||||| ||| |
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| T |
21258939 |
ccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctat |
21258840 |
T |
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| Q |
121 |
acttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctg |
196 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |||||| | |||||||| | |||||||||||||||||| |
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| T |
21258839 |
acttttcaatcaccttca-aaaaccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctg |
21258765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 21254357 - 21254262
Alignment:
| Q |
100 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctg |
196 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctg |
21254262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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