View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6153_low_3 (Length: 447)
Name: NF6153_low_3
Description: NF6153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6153_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 17879194 - 17879497
Alignment:
| Q |
13 |
aatatcaggtttctagctacaatatgcaactaacagattaattgaatgtatatcagagcacaaacctatatttaaatggacatgaaagtgaaggttgtgt |
112 |
Q |
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| T |
17879194 |
aatatcaggtttctagctacaatatgcaactaacagattaattgaacgtatatcagagcacaaacctatatttaaatggacatgaaagtgaaggttgtgt |
17879293 |
T |
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| Q |
113 |
aataagaatgaaagttgtctaactaataaagcttcacagagcaatcacagttaacgtatcaaaagattatctgttgaaccgaatcaaacttcagcttaaa |
212 |
Q |
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| T |
17879294 |
aataagagtgaaagttgtctaactaataaagcttcacagagcaatcacagttaacgtatcaaaagattatctgttgaaccgaatcaaacttcagcttgaa |
17879393 |
T |
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| Q |
213 |
acaagtatatcattatttatgtaaatgaggtatagcagtatttccaaaatcttagctaactaatactaccattcaaagatgacatacagtaaaatgtcca |
312 |
Q |
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| T |
17879394 |
ataagtatatcagtatttatgtaaatgaggtatagcagtatttccaaaatcttagctaactaatactaccattcaaagatgacatacagtaaaatgtcca |
17879493 |
T |
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| Q |
313 |
tgct |
316 |
Q |
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|||| |
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| T |
17879494 |
tgct |
17879497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 15046740 - 15046837
Alignment:
| Q |
174 |
aaagattatctgttgaaccgaatcaaacttcagcttaaaacaagtatatcattatttatgtaaatgaggtatagcagtatttccaaaatcttagctaa |
271 |
Q |
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| T |
15046740 |
aaagattatctatagaaccaaatcaaacttctgcttgaaacaggtatagcaatatttatgtaaataagatatagcaatatttccaaaattttagctaa |
15046837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 5326476 - 5326516
Alignment:
| Q |
225 |
ttatttatgtaaatgaggtatagcagtatttccaaaatctt |
265 |
Q |
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| T |
5326476 |
ttatttttgtaaatgaggtatagcaatatttccaaaatctt |
5326516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 15046916 - 15046966
Alignment:
| Q |
359 |
ttaaactagctgtcaatctgcttaatcaaatgttaatctgaagattaaagc |
409 |
Q |
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| T |
15046916 |
ttaaactacctttcaatctgcttaattaaatgtcaatctgaagatcaaagc |
15046966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 5325911 - 5325976
Alignment:
| Q |
110 |
tgtaataagaatgaaagttgtctaactaataaagcttcacagagcaatcacagttaacgtatcaaa |
175 |
Q |
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| T |
5325911 |
tgtaataagagtgaaagttgtctaattaataaagctcattagtgcaatcacagtcaacatatcaaa |
5325976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 36877968 - 36877896
Alignment:
| Q |
13 |
aatatcaggtttctagctacaa-tatgcaactaacagatt--aattgaatgtatatcagagcacaaacctata |
82 |
Q |
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| T |
36877968 |
aatatcaggtttctagctacaggtctgcaactaacagattttaattgaacatatatcagaacacaaacctata |
36877896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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