View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6154_high_10 (Length: 319)
Name: NF6154_high_10
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 50904431 - 50904144
Alignment:
| Q |
5 |
gactgaaatgaaactatctatacataatgcaataccgacagaacaataagaccatccccaatacaatggtaatacatatctatctataacaaccatccaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50904431 |
gactgaaatgaaactatctatacataatgcaataccgacagaacaataagaccatccccaatacaatggtaatacatatctatctataacaaccatccaa |
50904332 |
T |
|
| Q |
105 |
caaaataaccagaacaagaattgtaatactttgatggaaatacaggttcaaggagacaataacccccaatttcaaaatatttaactaaaaccctaaacgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50904331 |
caaaataaccagaacaagaattgtaatactttgatggaaatacaggttcaaggagacaataacccccaatttcaaaatatttaactaaaaccctaaacgc |
50904232 |
T |
|
| Q |
205 |
gaaaatcaaagaagagaaaaggaaccaccgaatggaaaacgaaattaatttgcagaaaagggaagaagaacatacctgaacgaacaac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50904231 |
gaaaatcaaagaagagaaaaggaaccaccgaatggaaaacgaaattaatttgcagaaaagggaagaagaacatacctgaacgaacaac |
50904144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 48838184 - 48838140
Alignment:
| Q |
219 |
agaaaaggaaccaccgaatggaaaacgaaattaatttgcagaaaa |
263 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48838184 |
agaaaaggaaccaccgagtggaaaacgaaattaatttgcagaaaa |
48838140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University