View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6154_high_11 (Length: 288)

Name: NF6154_high_11
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6154_high_11
NF6154_high_11
[»] chr4 (1 HSPs)
chr4 (1-288)||(2862421-2862729)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2862421 - 2862729
Alignment:
Q  1 acaagagtcttttattatgtttgtttgtgctgctgtttctttgactgggtctagtgctgctttagggttttttgttgggattgtactttactttttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2862421 acaagagtcttttattatgtttgtttgtgctgctgtttctttgactgggtctagtgctgctttagggttttttgttgggattgtactttactttttgttg 2862520  T
Q  101 aaattgagggagcttgattgtggtgatggatttgggttcttgtc---------caagaccaaatcctctaaggatgaagaaactcccttaattgcctaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2862521 aaattgagggagcttgattgtggtgatggatttgggttcttgtccaattccaacaagactaaatcctctaaggatgaagaaactcccttaattgcctaga 2862620  T
Q  192 cattttggtttgggttgtggttcgg------------atggattcatcaaaatcaaggattttctgcattcacgcagtcaataatttctagtaagtttca 279  Q
    |||||||||||||||| ||||||||            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2862621 cattttggtttgggttttggttcggatggagtgccgaatggattcatcaaaatcagggattttctgcattcacgcagtcaataatttctagtaagtttca 2862720  T
Q  280 taaatattt 288  Q
    |||||||||    
T  2862721 taaatattt 2862729  T

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