View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_high_12 (Length: 281)
Name: NF6154_high_12
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 6445736 - 6445473
Alignment:
| Q |
15 |
atagaaaagagtgatgcgatggatgtaataaattaataatgtgatnnnnnnnntgaaatgttgaatagatatagataattattggaggtacatatatcat |
114 |
Q |
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| T |
6445736 |
atagaaaagagtgatgcgatagatgtaataaattaataatgtgataaagaaaatgaaatgttgaatagatatagataattattggaggtacatatatcat |
6445637 |
T |
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| Q |
115 |
tgttgatttattttannnnnnnnattgagttcgattaacattgtgacttgccaagattcccaagaacatgtttgcatttgccattatctattgcaaataa |
214 |
Q |
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| T |
6445636 |
tgttgatttattttattttt---attgagttcgattaacattgtgacttgccaagatacccaagaacatgtttgcatttgccattatctattgcaaataa |
6445540 |
T |
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| Q |
215 |
tacctttctggttcacagatccttagaaattcaacggaactaaatcatcatggtctgactaactcac |
281 |
Q |
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| T |
6445539 |
tacccttctaggtcacagatccttagaaattcaacggaactaaatcatcatggtctgactaactcac |
6445473 |
T |
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